Klebsiella oxytoca complex: update on taxonomy, antimicrobial resistance, and virulence

J Yang, H Long, Y Hu, Y Feng… - Clinical microbiology …, 2022 - Am Soc Microbiol
Klebsiella oxytoca is actually a complex of nine species—Klebsiella grimontii, Klebsiella
huaxiensis, Klebsiella michiganensis, K. oxytoca, Klebsiella pasteurii, Klebsiella …

Contamination detection in genomic data: more is not enough

L Cornet, D Baurain - Genome Biology, 2022 - Springer
The decreasing cost of sequencing and concomitant augmentation of publicly available
genomes have created an acute need for automated software to assess genomic …

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

J Chun, A Oren, A Ventosa… - … of systematic and …, 2018 - microbiologyresearch.org
Advancement of DNA sequencing technology allows the routine use of genome sequences
in the various fields of microbiology. The information held in genome sequences proved to …

UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis

J Kim, SI Na, D Kim, J Chun - Journal of Microbiology, 2021 - Springer
Phylogenomic tree reconstruction has recently become a routine and critical task to
elucidate the evolutionary relationships among bacterial species. The most widely used …

The emerging phylogenetic perspective on the evolution of actinopterygian fishes

A Dornburg, TJ Near - Annual Review of Ecology, Evolution …, 2021 - annualreviews.org
The emergence of a new phylogeny of ray-finned fishes at the turn of the twenty-first century
marked a paradigm shift in understanding the evolutionary history of half of living …

Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

R Riesco, ME Trujillo - International Journal of Systematic …, 2024 - microbiologyresearch.org
The field of microbial taxonomy is dynamic, aiming to provide a stable and contemporary
classification system for prokaryotes. Traditionally, reliance on phenotypic characteristics …

Taxonomic profiling of skin microbiome and correlation with clinical skin parameters in healthy Koreans

JH Kim, SM Son, H Park, BK Kim, IS Choi, H Kim… - Scientific Reports, 2021 - nature.com
The interest in skin microbiome differences by ethnicity, age, and gender is increasing.
Compared to other ethnic groups, studies on the skin microbiome of Koreans remains …

The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes

IR Vitorino, OM Lage - Antonie Van Leeuwenhoek, 2022 - Springer
The phylum Planctomycetes comprises bacteria with uncommon features among
prokaryotes, such as cell division by budding, absence of the bacterial tubulin-homolog cell …

Safety Assessment of a Nham Starter Culture Lactobacillus plantarum BCC9546 via Whole-genome Analysis

N Chokesajjawatee, P Santiyanont, K Chantarasakha… - Scientific reports, 2020 - nature.com
The safety of microbial cultures utilized for consumption is vital for public health and should
be thoroughly assessed. Although general aspects on the safety assessment of microbial …

Fine scale sampling reveals early differentiation of rhizosphere microbiome from bulk soil in young Brachypodium plant roots

SM Acharya, MO Yee, S Diamond… - ISME …, 2023 - academic.oup.com
For a deeper and comprehensive understanding of the composition and function of
rhizosphere microbiomes, we need to focus at the scale of individual roots in standardized …