A review of imaging techniques for plant phenotyping

L Li, Q Zhang, D Huang - Sensors, 2014 - mdpi.com
Given the rapid development of plant genomic technologies, a lack of access to plant
phenotyping capabilities limits our ability to dissect the genetics of quantitative traits …

Lights, camera, action: high-throughput plant phenotyping is ready for a close-up

N Fahlgren, MA Gehan, I Baxter - Current opinion in plant biology, 2015 - Elsevier
Highlights•State of high-throughput imaging technologies.•Highlights of Maker-type
phenotyping technologies.•Table of well-curated publically available high-throughput …

Plant species classification using deep convolutional neural network

M Dyrmann, H Karstoft, HS Midtiby - Biosystems engineering, 2016 - Elsevier
Highlights•A convolutional neural network is designed to determine the species of
seedlings.•The system is trained and tested on images of 22 plant species.•The images are …

Deep plant phenomics: a deep learning platform for complex plant phenotyping tasks

JR Ubbens, I Stavness - Frontiers in plant science, 2017 - frontiersin.org
Plant phenomics has received increasing interest in recent years in an attempt to bridge the
genotype-to-phenotype knowledge gap. There is a need for expanded high-throughput …

The use of plant models in deep learning: an application to leaf counting in rosette plants

J Ubbens, M Cieslak, P Prusinkiewicz, I Stavness - Plant methods, 2018 - Springer
Deep learning presents many opportunities for image-based plant phenotyping. Here we
consider the capability of deep convolutional neural networks to perform the leaf counting …

Recurrent instance segmentation

B Romera-Paredes, PHS Torr - … , The Netherlands, October 11-14, 2016 …, 2016 - Springer
Instance segmentation is the problem of detecting and delineating each distinct object of
interest appearing in an image. Current instance segmentation approaches consist of …

Finely-grained annotated datasets for image-based plant phenotyping

M Minervini, A Fischbach, H Scharr… - Pattern recognition letters, 2016 - Elsevier
Image-based approaches to plant phenotyping are gaining momentum providing fertile
ground for several interesting vision tasks where fine-grained categorization is necessary …

Leaf segmentation in plant phenotyping: a collation study

H Scharr, M Minervini, AP French, C Klukas… - Machine vision and …, 2016 - Springer
Image-based plant phenotyping is a growing application area of computer vision in
agriculture. A key task is the segmentation of all individual leaves in images. Here we focus …

Leaf counting with deep convolutional and deconvolutional networks

S Aich, I Stavness - … of the IEEE international conference on …, 2017 - openaccess.thecvf.com
In this paper, we investigate the problem of counting rosette leaves from an RGB image, an
important task in plant phenotyping. We propose a data-driven approach for this task …

The sponge microbiome project

L Moitinho-Silva, S Nielsen, A Amir, A Gonzalez… - …, 2017 - academic.oup.com
Rhododendron delavayi Franch. is globally famous as an ornamental plant. Its distribution in
southwest China covers several different habitats and environments. However, not much …