An overview of methods for reconstructing 3-D chromosome and genome structures from Hi-C data

O Oluwadare, M Highsmith, J Cheng - Biological procedures online, 2019 - Springer
Over the past decade, methods for predicting three-dimensional (3-D) chromosome and
genome structures have proliferated. This has been primarily due to the development of high …

Intra-and inter-nucleosome interactions of the core histone tail domains in higher-order chromatin structure

S Pepenella, KJ Murphy, JJ Hayes - Chromosoma, 2014 - Springer
Eukaryotic chromatin is a hierarchical collection of nucleoprotein structures that package
DNA to form chromosomes. The initial levels of packaging include folding of long strings of …

H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

Y Cai, Y Zhang, YP Loh, JQ Tng, MC Lim, Z Cao… - Nature …, 2021 - nature.com
The mechanisms underlying gene repression and silencers are poorly understood. Here we
investigate the hypothesis that H3K27me3-rich regions of the genome, defined from clusters …

[图书][B] Diagnostic molecular biology

CH Shen - 2019 - books.google.com
Diagnostic Molecular Biology describes the fundamentals of molecular biology in a clear,
concise manner to aid in the comprehension of this complex subject. Each technique …

New Aspects on the Structure of Neutrophil Extracellular Traps from Chronic Obstructive Pulmonary Disease and In Vitro Generation

A Obermayer, W Stoiber, WD Krautgartner… - PloS one, 2014 - journals.plos.org
Polymorphonuclear neutrophils have in recent years attracted new attention due to their
ability to release neutrophil extracellular traps (NETs). These web-like extracellular …

Mammalian sperm nuclear organization: resiliencies and vulnerabilities

A Champroux, J Torres-Carreira… - Basic and clinical …, 2016 - Springer
Sperm cells are remarkably complex and highly specialized compared to somatic cells.
Their function is to deliver to the oocyte the paternal genomic blueprint along with a pool of …

Assessing chromatin condensation for epigenetics with a DNA-targeting sensor by FRET and FLIM techniques

X Zhang, L Wang, N Li, Y Xiao - Chinese Chemical Letters, 2021 - Elsevier
Here we propose a fluorescent sensor, Chroma-V, consisted of a Hoechst ligand (Hoe) to
target chromatin DNA and a BODIPY rotor (BDP) to sense the local viscosity that reflects …

Scanning ion conductance microscopy for imaging biological samples in liquid: a comparative study with atomic force microscopy and scanning electron microscopy

T Ushiki, M Nakajima, MH Choi, SJ Cho, F Iwata - Micron, 2012 - Elsevier
The present study was designed to show the applicability of scanning ion conductance
microscopy (SICM) for imaging different types of biological samples. For this purpose, we …

A machine learning approach for the identification of protein secondary structure elements from electron cryo‐microscopy density maps

D Si, S Ji, KA Nasr, J He - Biopolymers, 2012 - Wiley Online Library
The accuracy of the secondary structure element (SSE) identification from volumetric protein
density maps is critical for de‐novo backbone structure derivation in electron cryo …

[HTML][HTML] Atomic force microscopy in biology and biomedicine

KC Chang, YW Chiang, CH Yang, JW Liou - Tzu Chi Medical Journal, 2012 - Elsevier
In order to gain better understanding of the behavior of complex biological systems, it is
sometimes necessary to monitor biological samples in their native state and in their …