Transcription factors as readers and effectors of DNA methylation

H Zhu, G Wang, J Qian - Nature Reviews Genetics, 2016 - nature.com
Recent technological advances have made it possible to decode DNA methylomes at single-
base-pair resolution under various physiological conditions. Many aberrant or differentially …

DNA methylation: toward crop disease resistance improvement

S Tirnaz, J Batley - Trends in plant science, 2019 - cell.com
Crop diseases, in conjunction with climate change, are a major threat to global crop
production. DNA methylation is an epigenetic mark and is involved in plants' biological …

De novo gene birth

SB Van Oss, AR Carvunis - PLoS genetics, 2019 - journals.plos.org
De novo gene birth is the process by which new genes evolve from DNA sequences that
were ancestrally non-genic. De novo genes represent a subset of novel genes, and may be …

Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles

R Castanera, L López-Varas, A Borgognone… - PLoS …, 2016 - journals.plos.org
Transposable elements (TEs) are exceptional contributors to eukaryotic genome diversity.
Their ubiquitous presence impacts the genomes of nearly all species and mediates genome …

Diversity of cytosine methylation across the fungal tree of life

AJ Bewick, BT Hofmeister, RA Powers… - Nature ecology & …, 2019 - nature.com
The generation of thousands of fungal genomes is leading to a better understanding of
genes and genomic organization within the kingdom. However, the epigenome, which …

Post‐translational modifications drive secondary metabolite biosynthesis in Aspergillus: a review

K Yang, J Tian, NP Keller - Environmental Microbiology, 2022 - Wiley Online Library
Post‐translational modifications (PTMs) are important for protein function and regulate
multiple cellular processes and secondary metabolites (SMs) in fungi. Aspergillus species …

Biomass and Cordycepin Production by the Medicinal Mushroom Cordyceps militaris—A Review of Various Aspects and Recent Trends towards the Exploitation of a …

D Kontogiannatos, G Koutrotsios, S Xekalaki… - Journal of Fungi, 2021 - mdpi.com
Cordyceps militaris is an entomopathogenic ascomycete with similar pharmacological
importance to that of the wild caterpillar fungus Ophiocordyceps sinensis. C. militaris has …

Epigenetic mechanisms: an emerging player in plant-microbe interactions

QH Zhu, WX Shan, MA Ayliffe… - Molecular plant-microbe …, 2016 - Am Phytopath Society
Plants have developed diverse molecular and cellular mechanisms to cope with a lifetime of
exposure to a variety of pathogens. Host transcriptional reprogramming is a central part of …

Deep learning approaches for natural product discovery from plant endophytic microbiomes

SA Aghdam, AMV Brown - Environmental microbiome, 2021 - Springer
Plant microbiomes are not only diverse, but also appear to host a vast pool of secondary
metabolites holding great promise for bioactive natural products and drug discovery. Yet …

The DmtA methyltransferase contributes to Aspergillus flavus conidiation, sclerotial production, aflatoxin biosynthesis and virulence

K Yang, L Liang, F Ran, Y Liu, Z Li, H Lan, P Gao… - Scientific reports, 2016 - nature.com
DNA methylation is essential for epigenetic regulation of gene transcription and
development in many animals, plants and fungi. We investigated whether DNA methylation …