Microbial dark matter: from discovery to applications

Y Zha, H Chong, P Yang, K Ning - Genomics, Proteomics and …, 2022 - academic.oup.com
With the rapid increase of the microbiome samples and sequencing data, more and more
knowledge about microbial communities has been gained. However, there is still much more …

Whole-genome sequencing as part of national and international surveillance programmes for antimicrobial resistance: a roadmap

NIHR Global Health Research Unit on Genomic … - BMJ Global …, 2020 - gh.bmj.com
The global spread of antimicrobial resistance (AMR) and lack of novel alternative treatments
have been declared a global public health emergency by WHO. The greatest impact of AMR …

Genomic characterization of Salmonella enterica serovar weltevreden associated with human diarrhea

J Zhang, Z Peng, K Chen, Z Zhan, H Shen… - Microbiology …, 2023 - Am Soc Microbiol
Salmonella Weltevreden is an emerging pathogen associated with human diarrhea, and
knowledge of the genomics and epidemiology of this serovar is still limited. In this study, we …

[HTML][HTML] Omics sciences potential on bioprospecting of biological control microbial agents: the case of the Mexican agro-biotechnology

LC Córdova-Albores, LX Zelaya-Molina… - Revista mexicana de …, 2021 - scielo.org.mx
At present, studies of biological control agents of microbial origin (BCA-M) have mainly
focused on their taxonomic characterization, through the use of conventional molecular …

Parasitic infections of the central nervous system

BA Mathison, RS Bradbury - Molecular Medical Microbiology, 2024 - Elsevier
Parasites are an uncommon cause of infections of the human central nervous system (CNS).
When they do cause CNS infections; however, the results can be detrimental and as such …

[HTML][HTML] Characterization of the Cambaroides wladiwostokiensis Birstein & Vinogradov, 1934 (Decapoda: Astacidea) Mitochondrial Genome Using Genome Skimming …

SV Turanov, EI Barabanshchikov - Frontiers in Bioscience-Scholar, 2023 - imrpress.com
Background: The mitochondrial genome is a powerful tool for exploring and confirming
species identity and understanding evolutionary trajectories. The genus Cambaroides …

Targeted decontamination of sequencing data with CLEAN

M Lataretu, S Krautwurst, A Viehweger, C Brandt… - bioRxiv, 2023 - biorxiv.org
Background Many biological and medical questions are answered based on the analysis of
sequence data. However, we can find contaminations, artificial spike-ins, and …

Omics Technologies in the Plant–Microbe Interactions

KK Bastas, A Kumar - Microbial Biocontrol: Molecular Perspective in Plant …, 2023 - Springer
The investigation and integration of these chemical interactions are aided by studies of the
microbiomes connected to plants. Through cutting-edge genomic techniques like meta …

ContFree-NGS: Removing reads from contaminating organisms in next generation sequencing data

FV Peres, DM Riaño-Pachón - … on Bioinformatics, BSB 2021, Virtual Event …, 2021 - Springer
We present ContFree-NGS, an open source software that removes reads originating from
contaminant organisms in your sequencing dataset. The user has to provide a target taxon …

Potencial de las ciencias ómicas en la bioprospección de agentes microbianos de control biológico: el caso de la agro-biotecnología mexicana

LC Córdova-Albores, LX Zelaya-Molina… - Revista mexicana de …, 2021 - scielo.org.mx
Actualmente, los estudios sobre agentes de control biológico de origen microbiano (ACB-M)
generalmente están enfocados en la caracterización taxonómica mediante el uso de …