[HTML][HTML] Metabolic modelling approaches for describing and engineering microbial communities

B García-Jiménez, J Torres-Bacete… - Computational and …, 2021 - Elsevier
Microbes do not live in isolation but in microbial communities. The relevance of microbial
communities is increasing due to growing awareness of their influence on a huge number of …

Facing resistant bacteria with plant essential oils: Reviewing the oregano case

JO Fimbres-García, M Flores-Sauceda, ED Othon-Díaz… - Antibiotics, 2022 - mdpi.com
Antibiotic resistance is a serious global threat, and the misuse of antibiotics is considered its
main cause. It is characterized by the expression of bacterial defense mechanisms, eg, β …

Cocultivation of anaerobic fungi with rumen bacteria establishes an antagonistic relationship

CL Swift, KB Louie, BP Bowen, CA Hooker… - MBio, 2021 - Am Soc Microbiol
Anaerobic gut fungi (Neocallimastigomycetes) live in the digestive tract of large herbivores,
where they are vastly outnumbered by bacteria. It has been suggested that anaerobic fungi …

Leveraging experimental strategies to capture different dimensions of microbial interactions

G Gupta, A Ndiaye, M Filteau - Frontiers in Microbiology, 2021 - frontiersin.org
Microorganisms are a fundamental part of virtually every ecosystem on earth. Understanding
how collectively they interact, assemble, and function as communities has become a …

Enhancement of antibiotic production by co-cultivation of two antibiotic producing marine Vibrionaceae strains

Y Buijs, SD Zhang, KM Jørgensen… - FEMS Microbiology …, 2021 - academic.oup.com
Deciphering the cues that stimulate microorganisms to produce their full secondary
metabolic potential promises to speed up the discovery of novel drugs. Ecology-relevant …

Sustainable production of FAEE biodiesel using the oleaginous yeast Yarrowia lipolytica

A Yu, Y Zhao, J Li, S Li, Y Pang, Y Zhao… - …, 2020 - Wiley Online Library
Fatty acid ethyl esters (FAEEs) are fatty acid‐derived molecules and serve as an important
form of biodiesel. The oleaginous yeast Yarrowia lipolytica is considered an ideal host …

Vertical variations in microbial diversity, composition, and interactions in freshwater lake sediments on the Tibetan plateau

X Zhu, Y Deng, T Huang, C Han, L Chen… - Frontiers in …, 2023 - frontiersin.org
Microbial communities in freshwater lake sediments exhibit a distinct depth-dependent
variability. Further exploration is required to understand their biodiversity pattern and …

Deep learning predicts microbial interactions from self-organized spatiotemporal patterns

JY Lee, NC Sadler, RG Egbert, CR Anderton… - Computational and …, 2020 - Elsevier
Microbial communities organize into spatial patterns that are largely governed by
interspecies interactions. This phenomenon is an important metric for understanding …

Do organic substrates drive microbial community interactions in Arctic snow?

B Bergk Pinto, L Maccario, A Dommergue… - Frontiers in …, 2019 - frontiersin.org
The effect of nutrients on microbial interactions, including competition and collaboration, has
mainly been studied in laboratories, but their potential application to complex ecosystems is …

Peer pressure: evolutionary responses to biotic pressures in wine yeasts

CG Conacher, D Rossouw, FFB Bauer - FEMS Yeast Research, 2019 - academic.oup.com
In the macroscopic world, ecological interactions between multiple species of fauna and
flora are recognised as major role-players in the evolution of any particular species. By …