Histone lysine methylation dynamics: establishment, regulation, and biological impact

JC Black, C Van Rechem, JR Whetstine - Molecular cell, 2012 - cell.com
Histone lysine methylation has emerged as a critical player in the regulation of gene
expression, cell cycle, genome stability, and nuclear architecture. Over the past decade, a …

Double-edged sword: the evolutionary consequences of the epigenetic silencing of transposable elements

JY Choi, YCG Lee - PLoS genetics, 2020 - journals.plos.org
Transposable elements (TEs) are genomic parasites that selfishly replicate at the expense of
host fitness. Fifty years of evolutionary studies of TEs have concentrated on the deleterious …

The Drosophila embryo at single-cell transcriptome resolution

N Karaiskos, P Wahle, J Alles, A Boltengagen, S Ayoub… - Science, 2017 - science.org
By the onset of morphogenesis, Drosophila embryos consist of about 6000 cells that express
distinct gene combinations. Here, we used single-cell sequencing of precisely staged …

The Release 6 reference sequence of the Drosophila melanogaster genome

RA Hoskins, JW Carlson, KH Wan, S Park… - Genome …, 2015 - genome.cshlp.org
Drosophila melanogaster plays an important role in molecular, genetic, and genomic studies
of heredity, development, metabolism, behavior, and human disease. The initial reference …

Comparative analysis of metazoan chromatin organization

JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami… - Nature, 2014 - nature.com
Genome function is dynamically regulated in part by chromatin, which consists of the
histones, non-histone proteins and RNA molecules that package DNA. Studies in …

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

PV Kharchenko, AA Alekseyenko, YB Schwartz… - Nature, 2011 - nature.com
Chromatin is composed of DNA and a variety of modified histones and non-histone proteins,
which have an impact on cell differentiation, gene regulation and other key cellular …

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

F Roudier, I Ahmed, C Bérard, A Sarazin… - The EMBO …, 2011 - embopress.org
Post‐translational modification of histones and DNA methylation are important components
of chromatin‐level control of genome activity in eukaryotes. However, principles governing …

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

S Bonn, RP Zinzen, C Girardot, EH Gustafson… - Nature …, 2012 - nature.com
Chromatin modifications are associated with many aspects of gene expression, yet their role
in cellular transitions during development remains elusive. Here, we use a new approach to …

Heterochromatic breaks move to the nuclear periphery to continue recombinational repair

T Ryu, B Spatola, L Delabaere, K Bowlin, H Hopp… - Nature cell …, 2015 - nature.com
Heterochromatin mostly comprises repeated sequences prone to harmful ectopic
recombination during double-strand break (DSB) repair. In Drosophila …

Position-effect variegation, heterochromatin formation, and gene silencing in Drosophila

SCR Elgin, G Reuter - Cold Spring Harbor perspectives …, 2013 - cshperspectives.cshlp.org
Position-effect variegation (PEV) results when a gene normally in euchromatin is juxtaposed
with heterochromatin by rearrangement or transposition. When heterochromatin packaging …