Brownian dynamics (BD) simulations, a powerful computer simulation tool that has gained
significant attraction in investigating the intricate dynamics of chemical and biological …

Mechanisms of the complex formation between plastocyanin and cytochrome f in higher
plants (Spinacia oleracea and Brassica rapa), green microalgae Chlamydomonas …

Ferredoxin (Fd) protein transfers electrons from photosystem I (PSI) to ferredoxin: NADP+-
reductase (FNR) in the photosynthetic electron transport chain, as well as other metabolic …

Cytochrome c (CytC) is a single-electron carrier between complex bc1 and cytochrome c-
oxidase (CcO) in the electron transport chain (ETC). It is also known as a good radical …

Cytochrome c (CytC), a one-electron carrier, transfers electrons from complex bc 1 to
cytochrome c oxidase (CcO) in the electron-transport chain. Electrostatic interaction with the …

В работе предложен набор достаточно простых алгоритмов, который может быть
применен для анализа широкого круга белок-белковых взаимодействий. В настоящей …

Plastocyanin is a small mobile protein that facilitates electron transfer through the formation
of short-lived protein–protein complexes with cytochrome bf and photosystem 1. Due to the …

The application of Brownian dynamics for simulation of transient protein–protein interactions
is reviewed. The review focuses on the theoretical basics of the Brownian-dynamics method …

Electrostatic interaction of plastocyanin and cytochrome f in the process of protein–protein
complex formation was investigated by computer simulation methods. It was shown that long …

The Brownian dynamics method was used for qualitative analysis of the events that lead to
the formation of a functionally active plastocyanin–cytochrome f complex. The intermediate …