Principles and methods of integrative genomic analyses in cancer

VN Kristensen, OC Lingjærde, HG Russnes… - Nature Reviews …, 2014 - nature.com
Combined analyses of molecular data, such as DNA copy-number alteration, mRNA and
protein expression, point to biological functions and molecular pathways being deregulated …

[HTML][HTML] Targeting the oncogenic p53 mutants in colorectal cancer and other solid tumors

H Li, J Zhang, JHM Tong, AWH Chan, J Yu… - International journal of …, 2019 - mdpi.com
Colorectal cancer (CRC) is a kind of solid tumor and the third most common cancer type in
the world. It is a heterogeneous disease characterized by genetic and epigenetic …

[HTML][HTML] Clinical characteristics and outcomes of phase I cancer patients with CCNE1 amplification: MD Anderson experiences

S Yao, F Meric-Bernstam, D Hong, F Janku, A Naing… - Scientific reports, 2022 - nature.com
Cyclin E is frequently encoded by CCNE1 gene amplification in various malignancies. We
reviewed the medical records of patients with solid tumors displaying CCNE1 amplification …

Novel targets and interaction partners of mutant p53 Gain-Of-Function

L Aschauer, PAJ Muller - Biochemical Society Transactions, 2016 - portlandpress.com
In many human cancers p53 expression is lost or a mutant p53 protein is expressed. Over
the past 15 years it has become apparent that a large number of these mutant p53 proteins …

[HTML][HTML] RELAY, ramucirumab plus erlotinib (RAM+ ERL) in untreated metastatic EGFR-mutant NSCLC (EGFR+ NSCLC): association between TP53 status and …

M Nishio, L Paz-Ares, M Reck, K Nakagawa… - Clinical Lung Cancer, 2023 - Elsevier
Background Ramucirumab plus erlotinib (RAM+ ERL) demonstrated superior progression-
free survival (PFS) in RELAY, a randomised Phase 3 trial in patients with untreated …

Lymphocyte Invasion in IC10/Basal-Like Breast Tumors Is Associated with Wild-Type TP53

D Quigley, L Silwal-Pandit, R Dannenfelser… - Molecular Cancer …, 2015 - AACR
Lymphocytic infiltration is associated with better prognosis in several epithelial malignancies
including breast cancer. The tumor suppressor TP53 is mutated in approximately 30% of …

[HTML][HTML] Phase I study of pazopanib and vorinostat: a therapeutic approach for inhibiting mutant p53-mediated angiogenesis and facilitating mutant p53 degradation

S Fu, MM Hou, A Naing, F Janku, K Hess, R Zinner… - Annals of oncology, 2015 - Elsevier
ABSTRACT TP53 mutation enhances vascular endothelial growth factor overexpression,
rendering cancer cells sensitive to pazopanib. Furthermore, treatment with vorinostat …

Sample-specific perturbation of gene interactions identifies breast cancer subtypes

Y Chen, Y Gu, Z Hu, X Sun - Briefings in Bioinformatics, 2021 - academic.oup.com
Breast cancer is a highly heterogeneous disease, and there are many forms of
categorization for breast cancer based on gene expression profiles. Gene expression …

Molecular alterations in metaplastic breast carcinoma

CL Cooper, RZ Karim, C Selinger, H Carmalt… - Journal of clinical …, 2013 - jcp.bmj.com
Metaplastic carcinoma of the breast is a rare and heterogeneous subtype of breast
carcinoma with a generally poor outcome, and few therapeutic options once disease recurs …

[HTML][HTML] Phase I studies of vorinostat with ixazomib or pazopanib imply a role of antiangiogenesis-based therapy for TP53 mutant malignancies

Y Wang, F Janku, S Piha-Paul, K Hess, R Broaddus… - Scientific reports, 2020 - nature.com
We performed two phase I trials of the histone deacetylase inhibitor vorinostat combined
with either the vascular endothelial growth factor inhibitor pazopanib (NCT01339871) or the …