Advances in the profiling of DNA modifications: cytosine methylation and beyond

N Plongthongkum, DH Diep, K Zhang - Nature Reviews Genetics, 2014 - nature.com
Chemical modifications of DNA have been recognized as key epigenetic mechanisms for
maintenance of the cellular state and memory. Such DNA modifications include canonical 5 …

DNA in nanochannels: theory and applications

K Frykholm, V Müller, KK Sriram… - Quarterly Reviews of …, 2022 - cambridge.org
Nanofluidic structures have over the last two decades emerged as a powerful platform for
detailed analysis of DNA on the kilobase pair length scale. When DNA is confined to a …

Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH)

T Gabrieli, H Sharim, D Fridman, N Arbib… - Nucleic acids …, 2018 - academic.oup.com
Next generation sequencing (NGS) is challenged by structural and copy number variations
larger than the typical read length of several hundred bases. Third-generation sequencing …

Optical DNA mapping in nanofluidic devices: principles and applications

V Müller, F Westerlund - Lab on a Chip, 2017 - pubs.rsc.org
Optical DNA mapping has over the last decade emerged as a very powerful tool for
obtaining long range sequence information from single DNA molecules. In optical DNA …

Single-molecule optical genome mapping in nanochannels: multidisciplinarity at the nanoscale

J Jeffet, S Margalit, Y Michaeli… - Essays in …, 2021 - portlandpress.com
The human genome contains multiple layers of information that extend beyond the genetic
sequence. In fact, identical genetics do not necessarily yield identical phenotypes as evident …

Single-molecule DNA methylation quantification using electro-optical sensing in solid-state nanopores

T Gilboa, C Torfstein, M Juhasz, A Grunwald… - ACS …, 2016 - ACS Publications
Detection of epigenetic markers, including 5-methylcytosine, is crucial due to their role in
gene expression regulation and due to the mounting evidence of aberrant DNA methylation …

Methyltransferase‐Directed Labeling of Biomolecules and its Applications

J Deen, C Vranken, V Leen, RK Neely… - Angewandte Chemie …, 2017 - Wiley Online Library
Methyltransferases (MTases) form a large family of enzymes that methylate a diverse set of
targets, ranging from the three major biopolymers to small molecules. Most of these MTases …

Bacteriophage strain typing by rapid single molecule analysis

A Grunwald, M Dahan, A Giesbertz… - Nucleic acids …, 2015 - academic.oup.com
Rapid characterization of unknown biological samples is under the focus of many current
studies. Here we report a method for screening of biological samples by optical mapping of …

Multifunctional quantum dots-based cancer diagnostics and stem cell therapeutics for regenerative medicine

D Onoshima, H Yukawa, Y Baba - Advanced drug delivery reviews, 2015 - Elsevier
A field of recent diagnostics and therapeutics has been advanced with quantum dots (QDs).
QDs have developed into new formats of biomolecular sensing to push the limits of detection …

[HTML][HTML] Epigenetic basis of Alzheimer disease

AC Tecalco-Cruz, JO Ramírez-Jarquín… - World journal of …, 2020 - ncbi.nlm.nih.gov
Alzheimer disease (AD) is the primary form of dementia that occurs spontaneously in older
adults. Interestingly, the epigenetic profile of the cells forming the central nervous system …