Alternative splicing as a regulator of development and tissue identity

FE Baralle, J Giudice - Nature reviews Molecular cell biology, 2017 - nature.com
Alternative splicing of eukaryotic transcripts is a mechanism that enables cells to generate
vast protein diversity from a limited number of genes. The mechanisms and outcomes of …

RNA-binding proteins control gene expression and cell fate in the immune system

M Turner, MD Díaz-Muñoz - Nature immunology, 2018 - nature.com
RNA-binding proteins (RBPs) are essential for the development and function of the immune
system. They interact dynamically with RNA to control its biogenesis and turnover by …

Downregulated gene expression spectrum and immune responses changed during the disease progression in patients with COVID-19

Y Ouyang, J Yin, W Wang, H Shi, Y Shi… - Clinical infectious …, 2020 - academic.oup.com
Abstract Background The World Health Organization characterizes novel coronavirus
disease 2019 (COVID-19), which is caused by severe acute respiratory syndrome …

Alternative splicing and cancer: insights, opportunities, and challenges from an expanding view of the transcriptome

S Cherry, KW Lynch - Genes & Development, 2020 - genesdev.cshlp.org
Over the past decade there has been increased awareness of the potential role of
alternative splicing in the etiology of cancer. In particular, advances in RNA-Sequencing …

Dek modulates global intron retention during muscle stem cells quiescence exit

L Yue, R Wan, S Luan, W Zeng, TH Cheung - Developmental cell, 2020 - cell.com
Adult stem cells are essential for tissue regeneration. However, the mechanisms underlying
the activation of quiescent adult stem cells remain elusive. Using skeletal muscle stem cells …

Alternative splicing of MALT1 controls signalling and activation of CD4+ T cells

I Meininger, RA Griesbach, D Hu, T Gehring… - Nature …, 2016 - nature.com
MALT1 channels proximal T-cell receptor (TCR) signalling to downstream signalling
pathways. With MALT1A and MALT1B two conserved splice variants exist and we …

Viral-induced alternative splicing of host genes promotes influenza replication

MG Thompson, M Dittmar, MJ Mallory, P Bhat… - Elife, 2020 - elifesciences.org
Viral infection induces the expression of numerous host genes that impact the outcome of
infection. Here, we show that infection of human lung epithelial cells with influenza A virus …

TET‐catalyzed oxidation of intragenic 5‐methylcytosine regulates CTCF‐dependent alternative splicing

RJ Marina, D Sturgill, MA Bailly, M Thenoz… - The EMBO …, 2016 - embopress.org
Intragenic 5‐methylcytosine and CTCF mediate opposing effects on pre‐mRNA splicing:
CTCF promotes inclusion of weak upstream exons through RNA polymerase II pausing …

Global intron retention mediated gene regulation during CD4+ T cell activation

T Ni, W Yang, M Han, Y Zhang, T Shen… - Nucleic acids …, 2016 - academic.oup.com
T cell activation is a well-established model for studying cellular responses to exogenous
stimulation. Using strand-specific RNA-seq, we observed that intron retention is prevalent in …

Alternative splicing of MAPKs in the regulation of signaling specificity

G Maik-Rachline, I Wortzel, R Seger - Cells, 2021 - mdpi.com
The mitogen-activated protein kinase (MAPK) cascades transmit signals from extracellular
stimuli to a variety of distinct cellular processes. The MAPKKs in each cascade specifically …