RNA-binding proteins in bacteria

E Holmqvist, J Vogel - Nature Reviews Microbiology, 2018 - nature.com
RNA-binding proteins (RBPs) are central to most if not all cellular processes, dictating the
fate of virtually all RNA molecules in the cell. Starting with pioneering work on ribosomal …

The mechanisms of substrate selection, catalysis, and translocation by the elongating RNA polymerase

GA Belogurov, I Artsimovitch - Journal of molecular biology, 2019 - Elsevier
Multi-subunit DNA-dependent RNA polymerases synthesize all classes of cellular RNAs,
ranging from short regulatory transcripts to gigantic messenger RNAs. RNA polymerase has …

Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase ρ

N Said, T Hilal, ND Sunday, A Khatri, J Bürger, T Mielke… - Science, 2021 - science.org
INTRODUCTION Factor-dependent transcription termination is essential to limit pervasive
transcription, maintain genome stability, balance the expression of neighboring genes, and …

Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus

Y Murayama, H Ehara, M Aoki, M Goto, T Yokoyama… - Science …, 2023 - science.org
Transcription termination is an essential step in transcription by RNA polymerase (RNAP)
and crucial for gene regulation. For many bacterial genes, transcription termination is …

Pre-termination transcription complex: structure and function

Z Hao, V Epshtein, KH Kim, S Proshkin, V Svetlov… - Molecular cell, 2021 - cell.com
Rho is a general transcription termination factor playing essential roles in RNA polymerase
(RNAP) recycling, gene regulation, and genomic stability in most bacteria. Traditional …

Structural basis for transcript elongation control by NusG family universal regulators

JY Kang, RA Mooney, Y Nedialkov, J Saba… - Cell, 2018 - cell.com
Summary NusG/RfaH/Spt5 transcription elongation factors are the only transcription
regulators conserved across all life. Bacterial NusG regulates RNA polymerase (RNAP) …

Structural basis for NusA stabilized transcriptional pausing

X Guo, AG Myasnikov, J Chen, C Crucifix, G Papai… - Molecular cell, 2018 - cell.com
Transcriptional pausing by RNA polymerases (RNAPs) is a key mechanism to regulate gene
expression in all kingdoms of life and is a prerequisite for transcription termination. The …

Reliable identification of protein-protein interactions by crosslinking mass spectrometry

S Lenz, LR Sinn, FJ O'Reilly, L Fischer… - Nature …, 2021 - nature.com
Protein-protein interactions govern most cellular pathways and processes, and multiple
technologies have emerged to systematically map them. Assessing the error of interaction …

Transcription factors modulate RNA polymerase conformational equilibrium

C Zhu, X Guo, P Dumas, M Takacs… - Nature …, 2022 - nature.com
RNA polymerase (RNAP) frequently pauses during the transcription of DNA to RNA to
regulate gene expression. Transcription factors NusA and NusG modulate pausing, have …

Structural basis for the action of an all-purpose transcription anti-termination factor

F Krupp, N Said, YH Huang, B Loll, J Bürger, T Mielke… - Molecular cell, 2019 - cell.com
Bacteriophage λN protein, a model anti-termination factor, binds nascent RNA and host Nus
factors, rendering RNA polymerase resistant to all pause and termination signals. A 3.7-Å …