Bioinformatics for marine products: An overview of resources, bottlenecks, and perspectives

L Ambrosino, M Tangherlini, C Colantuono, A Esposito… - Marine drugs, 2019 - mdpi.com
The sea represents a major source of biodiversity. It exhibits many different ecosystems in a
huge variety of environmental conditions where marine organisms have evolved with …

Bioinformatics resources for plant abiotic stress responses: state of the art and opportunities in the fast evolving-omics era

L Ambrosino, C Colantuono, G Diretto, A Fiore… - Plants, 2020 - mdpi.com
Abiotic stresses are among the principal limiting factors for productivity in agriculture. In the
current era of continuous climate changes, the understanding of the molecular aspects …

[HTML][HTML] Comparative Transcriptomics to Identify RNA Writers and Erasers in Microalgae

L Ambrosino, A Riccardi, MS Welling… - International Journal of …, 2024 - mdpi.com
Epitranscriptomics is considered as a new regulatory step in eukaryotes for developmental
processes and stress responses. The aim of this study was, for the first time, to identify RNA …

m6A RNA Methylation in Marine Plants: First Insights and Relevance for Biological Rhythms

M Ruocco, L Ambrosino, M Jahnke… - International Journal of …, 2020 - mdpi.com
Circadian regulations are essential for enabling organisms to synchronize physiology with
environmental light-dark cycles. Post-transcriptional RNA modifications still represent an …

High turnover of de novo transcripts in Drosophila melanogaster

A Grandchamp, P Czuppon, E Bornberg-Bauer - bioRxiv, 2023 - biorxiv.org
Most of the transcribed genome in eukaryotes does not code for proteins but produces non-
genic transcripts. Among these non-genic transcripts some are newly transcribed, when …

Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine

L Ambrosino, V Ruggieri, H Bostan, M Miralto… - BMC …, 2018 - Springer
Background “Omics” approaches may provide useful information for a deeper understanding
of speciation events, diversification and function innovation. This can be achieved by …

Onecut regulates core components of the molecular machinery for neurotransmission in photoreceptor differentiation

QA Vassalli, C Colantuono, V Nittoli… - Frontiers in Cell and …, 2021 - frontiersin.org
Photoreceptor cells (PRC) are neurons highly specialized for sensing light stimuli and have
considerably diversified during evolution. The genetic mechanisms that underlie …

The ams proteins and the amylovoran biosynthetic pathway: an extensive bioinformatic study

L Carlini, A Esposito, L Ambrosino, S Bharti… - Journal of Plant …, 2023 - Springer
The genus Erwinia includes plant-pathogenic, non-pathogenic and even opportunistic
human pathogens. Among them, Erwinia amylovora is one of the most studied species, as …

Gcorn plant: a database for retrieving functional and evolutionary traits of plant genes

Y Ogata, N Kimura, R Sano - Plant Physiology, 2019 - academic.oup.com
Gene homology helps us understand gene function and speciation. The number of plant
genes and species registered in public databanks is continuously increasing. It is useful to …

[HTML][HTML] Functional conserved non-coding elements among tunicates and chordates

L Ambrosino, QA Vassalli, Y D'Agostino… - Developmental …, 2019 - Elsevier
Non-coding regions with dozens to several hundred base pairs of extreme conservation
have been found in all metazoan genomes. The distribution of these conserved non-coding …