Definition and clinical importance of haplotypes

DC Crawford, DA Nickerson - Annu. Rev. Med., 2005 - annualreviews.org
Advances in genotyping and sequencing technologies, coupled with the development of
sophisticated statistical methods, have afforded investigators novel opportunities to define …

Algorithms for inferring haplotypes

T Niu - Genetic Epidemiology: The Official Publication of the …, 2004 - Wiley Online Library
Haplotype phase information in diploid organisms provides valuable information on human
evolutionary history and may lead to the development of more efficient strategies to identify …

seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments

JF Flot - Molecular ecology resources, 2010 - Wiley Online Library
The program phase is widely used for Bayesian inference of haplotypes from diploid
genotypes; however, manually creating phase input files from sequence alignments is an …

Control of confounding of genetic associations in stratified populations

CJ Hoggart, EJ Parra, MD Shriver, C Bonilla… - The American Journal of …, 2003 - cell.com
To control for hidden population stratification in genetic-association studies, statistical
methods that use marker genotype data to infer population structure have been proposed as …

Disentangling the effects of demography and selection in human history

JE Stajich, MW Hahn - Molecular biology and evolution, 2005 - academic.oup.com
Demographic events affect all genes in a genome, whereas natural selection has only local
effects. Using publicly available data from 151 loci sequenced in both European-American …

A new algorithm for haplotype‐based association analysis: the Stochastic‐EM algorithm

DA Tregouet, S Escolano, L Tiret… - Annals of human …, 2004 - Wiley Online Library
It is now widely accepted that haplotypic information can be of great interest for investigating
the role of a candidate gene in the etiology of complex diseases. In the absence of family …

Prospects for inferring pairwise relationships with single nucleotide polymorphisms

JC Glaubitz, OE Rhodes Jr, JA DeWoody - Molecular Ecology, 2003 - Wiley Online Library
An extraordinarily large number of single nucleotide polymorphisms (SNPs) are now
available in humans as well as in other model organisms. Technological advancements may …

Computation vs. cloning: evaluation of two methods for haplotype determination

RJ Harrigan, ME Mazza… - Molecular Ecology …, 2008 - Wiley Online Library
Nuclear sequence data, often from multiple loci, are increasingly being employed in
analyses of population structure and history, yet there has been relatively little evaluation of …

Haplotype diversity across 100 candidate genes for inflammation, lipid metabolism, and blood pressure regulation in two populations

DC Crawford, CS Carlson, MJ Rieder… - The American Journal of …, 2004 - cell.com
Recent studies have suggested that a significant fraction of the human genome is contained
in blocks of strong linkage disequilibrium, ranging from∼ 5 to> 100 kb in length, and that …

A comprehensive literature review of haplotyping software and methods for use with unrelated individuals

RM Salem, J Wessel, NJ Schork - Human Genomics, 2005 - Springer
Interest in the assignment and frequency analysis of haplotypes in samples of unrelated
individuals has increased immeasurably as a result of the emphasis placed on haplotype …