[HTML][HTML] Transcriptomic responses in the fish intestine

SAM Martin, CE Dehler, E Król - Developmental & Comparative …, 2016 - Elsevier
The intestine, being a multifunctional organ central to both nutrient uptake, pathogen
recognition and regulating the intestinal microbiome, has been subjected to intense …

RNA sequencing for research and diagnostics in clinical oncology

A Buzdin, M Sorokin, A Garazha, A Glusker… - Seminars in cancer …, 2020 - Elsevier
Molecular diagnostics is becoming one of the major drivers of personalized oncology. With
hundreds of different approved anticancer drugs and regimens of their administration …

[HTML][HTML] Single-nuclei RNA sequencing assessment of the hepatic effects of 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin

R Nault, KA Fader, S Bhattacharya… - Cellular and Molecular …, 2021 - Elsevier
Background and Aims Characterization of cell specific transcriptional responses to
hepatotoxicants is lost in the averages of bulk RNA-sequencing (RNA-seq). Single …

H3K4me3, H3K9ac, H3K27ac, H3K27me3 and H3K9me3 histone tags suggest distinct regulatory evolution of open and condensed chromatin landmarks

AA Igolkina, A Zinkevich, KO Karandasheva, AA Popov… - Cells, 2019 - mdpi.com
Background: Transposons are selfish genetic elements that self-reproduce in host DNA.
They were active during evolutionary history and now occupy almost half of mammalian …

Single-cell transcriptomics shows dose-dependent disruption of hepatic zonation by TCDD in mice

R Nault, S Saha, S Bhattacharya, S Sinha… - Toxicological …, 2023 - academic.oup.com
Abstract 2, 3, 7, 8-Tetrachlorodibenzo-p-dioxin (TCDD) dose-dependently induces the
development of hepatic fat accumulation and inflammation with fibrosis in mice initially in the …

2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD)-elicited effects on bile acid homeostasis: Alterations in biosynthesis, enterohepatic circulation, and microbial metabolism

KA Fader, R Nault, C Zhang, K Kumagai… - Scientific reports, 2017 - nature.com
Abstract 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) is a persistent environmental
contaminant which elicits hepatotoxicity through activation of the aryl hydrocarbon receptor …

Dose-dependent metabolic reprogramming and differential gene expression in TCDD-elicited hepatic fibrosis

R Nault, KA Fader, DA Ammendolia… - Toxicological …, 2016 - academic.oup.com
We have previously shown that in response to 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD)-
elicited NAFLD progression, central carbon, glutaminolysis, and serine/folate metabolism …

Bioinformatic workflows for deriving transcriptomic points of departure: current status, data gaps, and research priorities

J O'Brien, C Mitchell, S Auerbach… - Toxicological …, 2024 - academic.oup.com
There is a pressing need to increase the efficiency and reliability of toxicological safety
assessment for protecting human health and the environment. Although conventional …

Lipidomic Evaluation of Aryl Hydrocarbon Receptor-Mediated Hepatic Steatosis in Male and Female Mice Elicited by 2,3,7,8-Tetrachlorodibenzo-p-dioxin

R Nault, KA Fader, TA Lydic… - Chemical research in …, 2017 - ACS Publications
The environmental contaminant 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin (TCDD) induces
hepatic steatosis mediated by the aryl hydrocarbon receptor. To further characterize TCDD …

2,3,7,8-Tetrachlorodibenzo-p-dioxin abolishes circadian regulation of hepatic metabolic activity in mice

KA Fader, R Nault, CM Doskey, RR Fling… - Scientific reports, 2019 - nature.com
Aryl hydrocarbon receptor (AhR) activation is reported to alter the hepatic expression of
circadian clock regulators, however the impact on clock-controlled metabolism has not been …