Solid-state fermentation: physiology of solid medium, its molecular basis and applications

J Barrios-González - Process Biochemistry, 2012 - Elsevier
Solid-state fermentation is an alternative culture method that has gained researchers
attention over the past 20 years. There are several advantages in employing many SSF …

Aspergillus as a multi-purpose cell factory: current status and perspectives

V Meyer, B Wu, AFJ Ram - Biotechnology letters, 2011 - Springer
Aspergilli have a long history in biotechnology as expression platforms for the production of
food ingredients, pharmaceuticals and enzymes. The achievements made during the last …

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

GC Cerqueira, MB Arnaud, DO Inglis… - Nucleic acids …, 2014 - academic.oup.com
Abstract The Aspergillus Genome Database (AspGD; http://www. aspgd. org) is a freely
available web-based resource that was designed for Aspergillus researchers and is also a …

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea …

Z Wang, B Fang, J Chen, X Zhang, Z Luo, L Huang… - BMC genomics, 2010 - Springer
Background The tuberous root of sweetpotato is an important agricultural and biological
organ. There are not sufficient transcriptomic and genomic data in public databases for …

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

W Wei, X Qi, L Wang, Y Zhang, W Hua, D Li, H Lv… - BMC genomics, 2011 - Springer
Background Sesame is an important oil crop, but limited transcriptomic and genomic data
are currently available. This information is essential to clarify the fatty acid and lignan …

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis …

D Li, Z Deng, B Qin, X Liu, Z Men - BMC genomics, 2012 - Springer
Background In rubber tree, bark is one of important agricultural and biological organs.
However, the molecular mechanism involved in the bark formation and development in …

Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

K Krizsán, É Almási, Z Merényi… - Proceedings of the …, 2019 - National Acad Sciences
The evolution of complex multicellularity has been one of the major transitions in the history
of life. In contrast to simple multicellular aggregates of cells, it has evolved only in a handful …

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data

W Jia, K Qiu, M He, P Song, Q Zhou, F Zhou, Y Yu… - Genome biology, 2013 - Springer
We have developed a new method, SOAPfuse, to identify fusion transcripts from paired-end
RNA-Seq data. SOAPfuse applies an improved partial exhaustion algorithm to construct a …

Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing

X Qi, S Xie, Y Liu, F Yi, J Yu - Plant Molecular Biology, 2013 - Springer
Drought is a major abiotic stress that affects plant growth, production, and survival. Plants
have evolved sophisticated and highly complex reactions to drought stress, including large …

Discovery of a “White-Gray-Opaque” Tristable Phenotypic Switching System in Candida albicans: Roles of Non-genetic Diversity in Host Adaptation

L Tao, H Du, G Guan, Y Dai, CJ Nobile, W Liang… - PLoS …, 2014 - journals.plos.org
Non-genetic phenotypic variations play a critical role in the adaption to environmental
changes in microbial organisms. Candida albicans, a major human fungal pathogen, can …