Drug discovery with explainable artificial intelligence

J Jiménez-Luna, F Grisoni, G Schneider - Nature Machine Intelligence, 2020 - nature.com
Deep learning bears promise for drug discovery, including advanced image analysis,
prediction of molecular structure and function, and automated generation of innovative …

[HTML][HTML] A compact review of molecular property prediction with graph neural networks

O Wieder, S Kohlbacher, M Kuenemann… - Drug Discovery Today …, 2020 - Elsevier
As graph neural networks are becoming more and more powerful and useful in the field of
drug discovery, many pharmaceutical companies are getting interested in utilizing these …

Knowledge graph-enhanced molecular contrastive learning with functional prompt

Y Fang, Q Zhang, N Zhang, Z Chen, X Zhuang… - Nature Machine …, 2023 - nature.com
Deep learning models can accurately predict molecular properties and help making the
search for potential drug candidates faster and more efficient. Many existing methods are …

Attention is all you need: utilizing attention in AI-enabled drug discovery

Y Zhang, C Liu, M Liu, T Liu, H Lin… - Briefings in …, 2024 - academic.oup.com
Recently, attention mechanism and derived models have gained significant traction in drug
development due to their outstanding performance and interpretability in handling complex …

End-to-end structure-aware convolutional networks for knowledge base completion

C Shang, Y Tang, J Huang, J Bi, X He… - Proceedings of the AAAI …, 2019 - ojs.aaai.org
Abstract Knowledge graph embedding has been an active research topic for knowledge
base completion, with progressive improvement from the initial TransE, TransH, DistMult et …

Comprehensive survey of recent drug discovery using deep learning

J Kim, S Park, D Min, W Kim - International Journal of Molecular Sciences, 2021 - mdpi.com
Drug discovery based on artificial intelligence has been in the spotlight recently as it
significantly reduces the time and cost required for developing novel drugs. With the …

Graph convolutional networks for computational drug development and discovery

M Sun, S Zhao, C Gilvary, O Elemento… - Briefings in …, 2020 - academic.oup.com
Despite the fact that deep learning has achieved remarkable success in various domains
over the past decade, its application in molecular informatics and drug discovery is still …

Attention models in graphs: A survey

JB Lee, RA Rossi, S Kim, NK Ahmed… - ACM Transactions on …, 2019 - dl.acm.org
Graph-structured data arise naturally in many different application domains. By representing
data as graphs, we can capture entities (ie, nodes) as well as their relationships (ie, edges) …

[PDF][PDF] Communicative Representation Learning on Attributed Molecular Graphs.

Y Song, S Zheng, Z Niu, ZH Fu, Y Lu, Y Yang - IJCAI, 2020 - ijcai.org
Constructing proper representations of molecules lies at the core of numerous tasks such as
molecular property prediction and drug design. Graph neural networks, especially message …

Spam review detection with graph convolutional networks

A Li, Z Qin, R Liu, Y Yang, D Li - Proceedings of the 28th ACM …, 2019 - dl.acm.org
Reviews on online shopping websites affect the buying decisions of customers, meanwhile,
attract lots of spammers aiming at misleading buyers. Xianyu, the largest second-hand …