Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Navigating traditional Chinese medicine network pharmacology and computational tools

M Yang, JL Chen, LW Xu, G Ji - … ‐Based Complementary and …, 2013 - Wiley Online Library
The concept of “network target” has ushered in a new era in the field of traditional Chinese
medicine (TCM). As a new research approach, network pharmacology is based on the …

LAGOS-NE: a multi-scaled geospatial and temporal database of lake ecological context and water quality for thousands of US lakes

PA Soranno, LC Bacon, M Beauchene, KE Bednar… - …, 2017 - academic.oup.com
Understanding the factors that affect water quality and the ecological services provided by
freshwater ecosystems is an urgent global environmental issue. Predicting how water quality …

Integrating multiple heterogeneous networks for novel lncRNA-disease association inference

J Zhang, Z Zhang, Z Chen… - IEEE/ACM transactions on …, 2017 - ieeexplore.ieee.org
Accumulating experimental evidence has indicated that long non-coding RNAs (lncRNAs)
are critical for the regulation of cellular biological processes implicated in many human …

A semi-supervised method for drug-target interaction prediction with consistency in networks

H Chen, Z Zhang - PloS one, 2013 - journals.plos.org
Computational prediction of interactions between drugs and their target proteins is of great
importance for drug discovery and design. The difficulties of developing computational …

Similarity-based methods for potential human microRNA-disease association prediction

H Chen, Z Zhang - BMC medical genomics, 2013 - Springer
Background The identification of microRNA-disease associations is critical for
understanding the molecular mechanisms of diseases. However, experimental …

Effects of psychological stress on innate immunity and metabolism in humans: a systematic analysis

S Priyadarshini, P Aich - 2012 - journals.plos.org
Stress is perhaps easiest to conceptualize as a process which allows an organism to
accommodate for the demands of its environment such that it can adapt to the prevailing set …

Global similarity method based on a two-tier random walk for the prediction of microRNA–disease association

M Chen, B Liao, Z Li - Scientific reports, 2018 - nature.com
Abstract microRNAs (miRNAs) mutation and maladjustment are related to the occurrence
and development of human diseases. Studies on disease-associated miRNA have …

Recent approaches to the prioritization of candidate disease genes

NT Doncheva, T Kacprowski… - … : Systems Biology and …, 2012 - Wiley Online Library
Many efforts are still devoted to the discovery of genes involved with specific phenotypes, in
particular, diseases. High‐throughput techniques are thus applied frequently to detect …

LDAH2V: Exploring meta-paths across multiple networks for lncRNA-disease association prediction

L Deng, W Li, J Zhang - IEEE/ACM Transactions on …, 2019 - ieeexplore.ieee.org
Accumulating evidence has demonstrated dysfunctions of long non-coding RNAs (lncRNAs)
are involved in various complex human diseases. However, even today, the relationships …