Trialbench: Multi-modal artificial intelligence-ready clinical trial datasets

J Chen, Y Hu, Y Wang, Y Lu, X Cao, M Lin, H Xu… - arXiv preprint arXiv …, 2024 - arxiv.org
Clinical trials are pivotal for developing new medical treatments, yet they typically pose
some risks such as patient mortality, adverse events, and enrollment failure that waste …

TWIN-GPT: Digital Twins for Clinical Trials via Large Language Model

Y Wang, T Fu, Y Xu, Z Ma, H Xu, B Du, Y Lu… - ACM Transactions on …, 2024 - dl.acm.org
Clinical trials are indispensable for medical research and the development of new
treatments. However, clinical trials often involve thousands of participants and can span …

Drugclip: Contrastive drug-disease interaction for drug repurposing

Y Lu, Y Hu, C Li - arXiv preprint arXiv:2407.02265, 2024 - arxiv.org
Bringing a novel drug from the original idea to market typically requires more than ten years
and billions of dollars. To alleviate the heavy burden, a natural idea is to reuse the approved …

Smiles-mamba: Chemical mamba foundation models for drug admet prediction

B Xu, Y Lu, C Li, L Yue, X Wang, N Hao, T Fu… - arXiv preprint arXiv …, 2024 - arxiv.org
In drug discovery, predicting the absorption, distribution, metabolism, excretion, and toxicity
(ADMET) properties of small-molecule drugs is critical for ensuring safety and efficacy …

TrialEnroll: Predicting Clinical Trial Enrollment Success with Deep & Cross Network and Large Language Models

L Yue, S Xing, J Chen, T Fu - arXiv preprint arXiv:2407.13115, 2024 - arxiv.org
Clinical trials need to recruit a sufficient number of volunteer patients to demonstrate the
statistical power of the treatment (eg, a new drug) in curing a certain disease. Clinical trial …

BioMamba: A Pre-trained Biomedical Language Representation Model Leveraging Mamba

L Yue, S Xing, Y Lu, T Fu - arXiv preprint arXiv:2408.02600, 2024 - arxiv.org
The advancement of natural language processing (NLP) in biology hinges on models' ability
to interpret intricate biomedical literature. Traditional models often struggle with the complex …

Integrating HCI Datasets in Project-Based Machine Learning Courses: A College-Level Review and Case Study

X Qu, M Key, E Luo, C Qiu - arXiv preprint arXiv:2408.03472, 2024 - arxiv.org
This study explores the integration of real-world machine learning (ML) projects using
human-computer interfaces (HCI) datasets in college-level courses to enhance both …

CT-Agent: Clinical Trial Multi-Agent with Large Language Model-based Reasoning

L Yue, T Fu - arXiv preprint arXiv:2404.14777, 2024 - arxiv.org
Large Language Models (LLMs) and multi-agent systems have shown impressive
capabilities in natural language tasks but face challenges in clinical trial applications …

Quantum-machine-assisted Drug Discovery: Survey and Perspective

Y Zhou, J Chen, W Li, J Cheng, G Karemore… - arXiv preprint arXiv …, 2024 - arxiv.org
Drug discovery and development is a highly complex and costly endeavor, typically
requiring over a decade and substantial financial investment to bring a new drug to market …

DrugAgent: Explainable Drug Repurposing Agent with Large Language Model-based Reasoning

Y Inoue, T Song, T Fu - arXiv preprint arXiv:2408.13378, 2024 - arxiv.org
Drug repurposing offers a promising avenue for accelerating drug development by
identifying new therapeutic potentials of existing drugs. In this paper, we propose a multi …