The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)

Z Peng, Y Lu, L Li, Q Zhao, QI Feng, Z Gao, H Lu… - Nature …, 2013 - nature.com
Bamboo represents the only major lineage of grasses that is native to forests and is one of
the most important non-timber forest products in the world. However, no species in the …

The Sorghum bicolor genome and the diversification of grasses

AH Paterson, JE Bowers, R Bruggmann, I Dubchak… - Nature, 2009 - nature.com
Sorghum, an African grass related to sugar cane and maize, is grown for food, feed, fibre
and fuel. We present an initial analysis of the∼ 730-megabase Sorghum bicolor (L.) …

The genome of the cucumber, Cucumis sativus L.

S Huang, R Li, Z Zhang, LI Li, X Gu, W Fan, WJ Lucas… - Nature …, 2009 - nature.com
Cucumber is an economically important crop as well as a model system for sex
determination studies and plant vascular biology. Here we report the draft genome …

New perspectives on glutamine synthetase in grasses

SM Swarbreck, M Defoin-Platel, M Hindle… - Journal of …, 2011 - academic.oup.com
Members of the glutamine synthetase (GS) gene family have now been characterized in
many crop species such as wheat, rice, and maize. Studies have shown that cytosolic GS …

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

M Wang, Y Yu, G Haberer, PR Marri, C Fan… - Nature …, 2014 - nature.com
The cultivation of rice in Africa dates back more than 3,000 years. Interestingly, African rice is
not of the same origin as Asian rice (Oryza sativa L.) but rather is an entirely different species …

UniRef: comprehensive and non-redundant UniProt reference clusters

BE Suzek, H Huang, P McGarvey, R Mazumder… - …, 2007 - academic.oup.com
Motivation: Redundant protein sequences in biological databases hinder sequence
similarity searches and make interpretation of search results difficult. Clustering of protein …

The TIGR rice genome annotation resource: improvements and new features

S Ouyang, W Zhu, J Hamilton, H Lin… - Nucleic acids …, 2007 - academic.oup.com
Abstract In The Institute for Genomic Research Rice Genome Annotation project (), we have
continued to update the rice genome sequence with new data and improve the quality of the …

A genome triplication associated with early diversification of the core eudicots

Y Jiao, J Leebens-Mack, S Ayyampalayam, JE Bowers… - Genome biology, 2012 - Springer
Background Although it is agreed that a major polyploidy event, gamma, occurred within the
eudicots, the phylogenetic placement of the event remains unclear. Results To determine …

Draft genome sequence of the oilseed species Ricinus communis

AP Chan, J Crabtree, Q Zhao, H Lorenzi, J Orvis… - Nature …, 2010 - nature.com
Castor bean (Ricinus communis) is an oilseed crop that belongs to the spurge
(Euphorbiaceae) family, which comprises∼ 6,300 species that include cassava (Manihot …

QuantPrime–a flexible tool for reliable high-throughput primer design for quantitative PCR

S Arvidsson, M Kwasniewski, DM Riaño-Pachón… - BMC …, 2008 - Springer
Background Medium-to large-scale expression profiling using quantitative polymerase chain
reaction (qPCR) assays are becoming increasingly important in genomics research. A major …