Bacteriophages of Mycobacterium tuberculosis, their diversity, and potential therapeutic uses: a review

F Zeynali kelishomi, S Khanjani, F Fardsanei… - BMC Infectious …, 2022 - Springer
Tuberculosis (TB) caused by Mycobacterium tuberculosis (M. tuberculosis) is a highly
infectious disease and worldwide health problem. Based on the WHO TB report, 9 million …

What are microsatellites and how to choose the best tool: a user-friendly review of SSR and 74 SSR mining tools

SIA Alves, CWD Dantas, DB Macedo… - Frontiers in …, 2024 - frontiersin.org
Microsatellites, also known as SSR or STR, are essential molecular markers in genomic
research, playing crucial roles in genetic mapping, population genetics, and evolutionary …

Comparison of the microsatellite distribution patterns in the genomes of euarchontoglires at the taxonomic level

X Song, T Yang, X Zhang, Y Yuan, X Yan, Y Wei… - Frontiers in …, 2021 - frontiersin.org
Microsatellite or simple sequence repeat (SSR) instability within genes can induce genetic
variation. The SSR signatures remain largely unknown in different clades within …

Microsatellite signature analysis of twenty-one virophage genomes of the family Lavidaviridae

T Nasrin, M Hoque, S Ali - Gene, 2023 - Elsevier
Abstract Microsatellites or Simple Sequence Repeats (SSRs) are short motif repeat
sequences constituting the most hypervariable regions of genomes. Present study extracts …

Phylo-geo-network and haplogroup analysis of 611 novel coronavirus (SARS-CoV-2) genomes from India

R Laskar, S Ali - Life Science Alliance, 2021 - life-science-alliance.org
The novel coronavirus (SARS-CoV-2) from Wuhan China discovered in December 2019 has
since developed into a global epidemic. Presently, we constructed and analyzed the phylo …

Comprehensive comparative genomic and microsatellite analysis of SARS, MERS, BAT‐SARS, and COVID‐19 coronaviruses

HA Rehman, F Ramzan, Z Basharat… - Journal of Medical …, 2021 - Wiley Online Library
Abstract The coronavirus disease 2019 (COVID‐19) pandemic has spread around the globe
very rapidly. Previously, the evolution pattern and similarity among the COVID‐19 causative …

Implications of genome simple sequence repeats signature in 98 Polyomaviridae species

R Laskar, MG Jilani, S Ali - 3 Biotech, 2021 - Springer
The analysis of simple sequence repeats (SSRs) in 98 genomes across four genera of the
family Polyomaviridae was performed. The genome size ranged from 3962 (BM87) to 7369 …

In silico analysis on frequency and distribution of microsatellites in genes associated with spinal cord astrocytoma

TS Ahmed, K Mahmood, MSNA Khattak, A Noor… - Human Gene, 2024 - Elsevier
Microsatellites, also called short tandem repeats (STRs) or simple sequence repeats (SSRs)
are short DNA sequence segments consisting of tandemly repeated motifs. SSRs are …

Systems biology of the genomes' microsatellite signature of Orthopoxvirus including the Monkeypox virus

T Nasrin, M Hoque, S Ali - Comparative Immunology, Microbiology and …, 2023 - Elsevier
This study is an attempt to extract and analyse the microsatellites or simple sequence
repeats (SSRs) from the genomes of eight species of the genus Orthopoxvirus. The average …

Mutational analysis and assessment of its impact on proteins of SARS-CoV-2 genomes from India

R Laskar, S Ali - Gene, 2021 - Elsevier
Mutational status of SARS-CoV-2 genomes from India along with their impact on proteins
was ascertained through multiple tools including MEGA, Genome Detective, SIFT …