Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

Molecular docking: shifting paradigms in drug discovery

L Pinzi, G Rastelli - International journal of molecular sciences, 2019 - mdpi.com
Molecular docking is an established in silico structure-based method widely used in drug
discovery. Docking enables the identification of novel compounds of therapeutic interest …

Graph neural networks: foundation, frontiers and applications

L Wu, P Cui, J Pei, L Zhao, X Guo - … of the 28th ACM SIGKDD Conference …, 2022 - dl.acm.org
The field of graph neural networks (GNNs) has seen rapid and incredible strides over the
recent years. Graph neural networks, also known as deep learning on graphs, graph …

Drug repurposing: progress, challenges and recommendations

S Pushpakom, F Iorio, PA Eyers, KJ Escott… - Nature reviews Drug …, 2019 - nature.com
Given the high attrition rates, substantial costs and slow pace of new drug discovery and
development, repurposing of'old'drugs to treat both common and rare diseases is …

Systematic integration of biomedical knowledge prioritizes drugs for repurposing

DS Himmelstein, A Lizee, C Hessler, L Brueggeman… - Elife, 2017 - elifesciences.org
The ability to computationally predict whether a compound treats a disease would improve
the economy and success rate of drug approval. This study describes Project Rephetio to …

Drug repositioning based on comprehensive similarity measures and bi-random walk algorithm

H Luo, J Wang, M Li, J Luo, X Peng, FX Wu… - …, 2016 - academic.oup.com
Motivation: Drug repositioning, which aims to identify new indications for existing drugs,
offers a promising alternative to reduce the total time and cost of traditional drug …

Biomedical data and computational models for drug repositioning: a comprehensive review

H Luo, M Li, M Yang, FX Wu, Y Li… - Briefings in …, 2021 - academic.oup.com
Drug repositioning can drastically decrease the cost and duration taken by traditional drug
research and development while avoiding the occurrence of unforeseen adverse events …

Drug-target interaction prediction with graph regularized matrix factorization

A Ezzat, P Zhao, M Wu, XL Li… - IEEE/ACM transactions …, 2016 - ieeexplore.ieee.org
Experimental determination of drug-target interactions is expensive and time-consuming.
Therefore, there is a continuous demand for more accurate predictions of interactions using …

[HTML][HTML] Toward better drug repositioning: prioritizing and integrating existing methods into efficient pipelines

G Jin, STC Wong - Drug discovery today, 2014 - Elsevier
Highlights•Understanding the existing drug repositioning methods with a top-down
flowchart.•Prioritizing repositioning methods using their integrated knowledge and …

[HTML][HTML] Drugs repurposed: An advanced step towards the treatment of breast cancer and associated challenges

JA Malik, S Ahmed, B Jan, O Bender… - Biomedicine & …, 2022 - Elsevier
Breast cancer (BC) is mostly observed in women and is responsible for huge mortality in
women subjects globally. Due to the continued development of drug resistance and other …