Directed evolution: methodologies and applications

Y Wang, P Xue, M Cao, T Yu, ST Lane… - Chemical reviews, 2021 - ACS Publications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …

Expanding and reprogramming the genetic code

JW Chin - Nature, 2017 - nature.com
Nature uses a limited, conservative set of amino acids to synthesize proteins. The ability to
genetically encode an expanded set of building blocks with new chemical and physical …

Escherichia coli “Marionette” strains with 12 highly optimized small-molecule sensors

AJ Meyer, TH Segall-Shapiro, E Glassey… - Nature chemical …, 2019 - nature.com
Cellular processes are carried out by many genes, and their study and optimization requires
multiple levers by which they can be independently controlled. The most common method is …

Ultrahigh-Throughput Enzyme Engineering and Discovery in In Vitro Compartments

M Gantz, S Neun, EJ Medcalf, LD van Vliet… - Chemical …, 2023 - ACS Publications
Novel and improved biocatalysts are increasingly sourced from libraries via experimental
screening. The success of such campaigns is crucially dependent on the number of …

Methods for the directed evolution of proteins

MS Packer, DR Liu - Nature Reviews Genetics, 2015 - nature.com
Directed evolution has proved to be an effective strategy for improving or altering the activity
of biomolecules for industrial, research and therapeutic applications. The evolution of …

Principles of genetic circuit design

JAN Brophy, CA Voigt - Nature methods, 2014 - nature.com
Cells navigate environments, communicate and build complex patterns by initiating gene
expression in response to specific signals. Engineers seek to harness this capability to …

Scalable, continuous evolution of genes at mutation rates above genomic error thresholds

A Ravikumar, GA Arzumanyan, MKA Obadi… - Cell, 2018 - cell.com
Directed evolution is a powerful approach for engineering biomolecules and understanding
adaptation. However, experimental strategies for directed evolution are notoriously labor …

Virus-assisted directed evolution of enhanced suppressor tRNAs in mammalian cells

D Jewel, RE Kelemen, RL Huang, Z Zhu… - Nature …, 2023 - nature.com
Site-specific incorporation of unnatural amino acids (Uaas) in living cells relies on
engineered aminoacyl-transfer RNA synthetase–tRNA pairs borrowed from a distant domain …

Microbiome therapeutics—advances and challenges

M Mimee, RJ Citorik, TK Lu - Advanced drug delivery reviews, 2016 - Elsevier
The microbial community that lives on and in the human body exerts a major impact on
human health, from metabolism to immunity. In order to leverage the close associations …

Photodissociation mass spectrometry: new tools for characterization of biological molecules

JS Brodbelt - Chemical Society Reviews, 2014 - pubs.rsc.org
Photodissociation mass spectrometry combines the ability to activate and fragment ions
using photons with the sensitive detection of the resulting product ions by mass …