Signal propagation in complex networks

P Ji, J Ye, Y Mu, W Lin, Y Tian, C Hens, M Perc, Y Tang… - Physics reports, 2023 - Elsevier
Signal propagation in complex networks drives epidemics, is responsible for information
going viral, promotes trust and facilitates moral behavior in social groups, enables the …

The emergence, genomic diversity and global spread of SARS-CoV-2

J Li, S Lai, GF Gao, W Shi - Nature, 2021 - nature.com
Since the first cases of COVID-19 were documented in Wuhan, China in 2019, the world has
witnessed a devastating global pandemic, with more than 238 million cases, nearly 5 million …

Tools and techniques for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)/COVID-19 detection

SH Safiabadi Tali, JJ LeBlanc, Z Sadiq… - Clinical microbiology …, 2021 - Am Soc Microbiol
SUMMARY The coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute
respiratory disease coronavirus 2 (SARS-CoV-2), has led to millions of confirmed cases and …

Testing at scale during the COVID-19 pandemic

TR Mercer, M Salit - Nature Reviews Genetics, 2021 - nature.com
Assembly and publication of the severe acute respiratory syndrome coronavirus 2 (SARS-
CoV-2) genome in January 2020 enabled the immediate development of tests to detect the …

Off-season RSV epidemics in Australia after easing of COVID-19 restrictions

JS Eden, C Sikazwe, R Xie, YM Deng… - Nature …, 2022 - nature.com
Human respiratory syncytial virus (RSV) is an important cause of acute respiratory infection
with the most severe disease in the young and elderly. Non-pharmaceutical interventions …

Modelling transmission and control of the COVID-19 pandemic in Australia

SL Chang, N Harding, C Zachreson, OM Cliff… - Nature …, 2020 - nature.com
There is a continuing debate on relative benefits of various mitigation and suppression
strategies aimed to control the spread of COVID-19. Here we report the results of agent …

Covasim: an agent-based model of COVID-19 dynamics and interventions

CC Kerr, RM Stuart, D Mistry… - PLOS Computational …, 2021 - journals.plos.org
The COVID-19 pandemic has created an urgent need for models that can project epidemic
trends, explore intervention scenarios, and estimate resource needs. Here we describe the …

Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic

Y Turakhia, B Thornlow, AS Hinrichs, N De Maio… - Nature …, 2021 - nature.com
As the SARS-CoV-2 virus spreads through human populations, the unprecedented
accumulation of viral genome sequences is ushering in a new era of 'genomic contact …

Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

RA Bull, TN Adikari, JM Ferguson, JM Hammond… - Nature …, 2020 - nature.com
Viral whole-genome sequencing (WGS) provides critical insight into the transmission and
evolution of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). Long-read …

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

M Chiara, AM D'Erchia, C Gissi… - Briefings in …, 2021 - academic.oup.com
Various next generation sequencing (NGS) based strategies have been successfully used in
the recent past for tracing origins and understanding the evolution of infectious agents …