Molecular and evolutionary processes generating variation in gene expression

MS Hill, P Vande Zande, PJ Wittkopp - Nature Reviews Genetics, 2021 - nature.com
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …

Genetics of trans-regulatory variation in gene expression

FW Albert, JS Bloom, J Siegel, L Day, L Kruglyak - Elife, 2018 - elifesciences.org
Heritable variation in gene expression forms a crucial bridge between genomic variation
and the biology of many traits. However, most expression quantitative trait loci (eQTLs) …

Mechanisms of regulatory evolution in yeast

MA Siddiq, PJ Wittkopp - Current opinion in genetics & development, 2022 - Elsevier
Highlights•Cis-and trans-acting mutations contribute differently to gene expression
evolution.•Cis-regulatory variants often have larger effects and alter expression of fewer …

Pleiotropic effects of trans-regulatory mutations on fitness and gene expression

P Vande Zande, MS Hill, PJ Wittkopp - Science, 2022 - science.org
Variation in gene expression arises from cis-and trans-regulatory mutations, which
contribute differentially to expression divergence. We compare the impacts on gene …

Fitness effects of altering gene expression noise in Saccharomyces cerevisiae

F Duveau, A Hodgins-Davis, BPH Metzger, B Yang… - Elife, 2018 - elifesciences.org
Gene expression noise is an evolvable property of biological systems that describes
differences in expression among genetically identical cells in the same environment. Prior …

Empirical mean-noise fitness landscapes reveal the fitness impact of gene expression noise

JM Schmiedel, LB Carey, B Lehner - Nature Communications, 2019 - nature.com
The effects of cell-to-cell variation (noise) in gene expression have proven difficult to quantify
because of the mechanistic coupling of noise to mean expression. To independently …

DNA variants affecting the expression of numerous genes in trans have diverse mechanisms of action and evolutionary histories

S Lutz, C Brion, M Kliebhan, FW Albert - PLoS Genetics, 2019 - journals.plos.org
DNA variants that alter gene expression contribute to variation in many phenotypic traits. In
particular, trans-acting variants, which are often located on different chromosomes from the …

A fitness trade-off explains the early fate of yeast aneuploids with chromosome gains

S Pompei… - Proceedings of the …, 2023 - National Acad Sciences
The early development of aneuploidy from an accidental chromosome missegregation
shows contrasting effects. On the one hand, it is associated with significant cellular stress …

Active compensation for changes in TDH3 expression mediated by direct regulators of TDH3 in Saccharomyces cerevisiae

P Vande Zande, MA Siddiq, A Hodgins-Davis… - Plos …, 2023 - journals.plos.org
Genetic networks are surprisingly robust to perturbations caused by new mutations. This
robustness is conferred in part by compensation for loss of a gene's activity by genes with …

Genome-wide analysis reveals Hsf1 maintains high transcript abundance of target genes controlled by strong constitutive promoter in Saccharomyces cerevisiae

D Cui, L Liu, L Sun, X Lin, L Lin, C Zhang - Biotechnology for Biofuels and …, 2023 - Springer
Background In synthetic biology, the strength of promoter elements is the basis for precise
regulation of target gene transcription levels, which in turn increases the yield of the target …