Deep reticulation: the long legacy of hybridization in vascular plant evolution

GW Stull, KK Pham, PS Soltis, DE Soltis - The Plant Journal, 2023 - Wiley Online Library
Hybridization has long been recognized as a fundamental evolutionary process in plants
but, until recently, our understanding of its phylogenetic distribution and biological …

Apomixis in systematics, evolution and phylogenetics of angiosperms: current developments and prospects

E Hörandl, D Hojsgaard, A Caperta… - Critical Reviews in …, 2024 - Taylor & Francis
Apomixis, the reproduction via asexually formed seed, is taxonomically scattered in
angiosperms. Here we review the major developmental pathways to apomixis and the …

Chloroplast and whole-genome sequencing shed light on the evolutionary history and phenotypic diversification of peanuts

Z Zheng, Z Sun, F Qi, Y Fang, K Lin, S Pavan… - Nature Genetics, 2024 - nature.com
Cultivated peanut (Arachis hypogaea L.) is a widely grown oilseed crop worldwide;
however, the events leading to its origin and diversification are not fully understood. Here by …

Phylogenomics insights into gene evolution, rapid species diversification, and morphological innovation of the apple tribe (Maleae, Rosaceae)

L Zhang, DF Morales‐Briones, Y Li, G Zhang… - New …, 2023 - Wiley Online Library
Maleae is one of the most widespread tribes of Rosaceae and includes several important
fruit crops and ornamental plants. We used nuclear genes from 62 transcriptomes/genomes …

Phylogenomics and divergence pattern of Polygonatum (Asparagaceae: Polygonateae) in the north temperate region

YQ Qin, MH Zhang, CY Yang, ZL Nie, J Wen… - Molecular Phylogenetics …, 2024 - Elsevier
Polygonatum is the largest genus of tribe Polygonateae (Asparagaceae) and is widely
distributed in the temperate Northern Hemisphere, especially well diversified in …

PlantTribes2: Tools for comparative gene family analysis in plant genomics

EK Wafula, H Zhang, G Von Kuster… - Frontiers in Plant …, 2023 - frontiersin.org
Plant genome-scale resources are being generated at an increasing rate as sequencing
technologies continue to improve and raw data costs continue to fall; however, the cost of …

Nuclear phylogenomics of angiosperms and insights into their relationships and evolution

G Zhang, H Ma - Journal of Integrative Plant Biology, 2024 - Wiley Online Library
Angiosperms (flowering plants) are by far the most diverse land plant group with over
300,000 species. The sudden appearance of diverse angiosperms in the fossil record was …

A chromosome-scale assembly for 'd'Anjou'pear

A Yocca, M Akinyuwa, N Bailey, B Cliver… - G3: Genes …, 2024 - academic.oup.com
Cultivated pear consists of several Pyrus species with Pyrus communis (European pear)
representing a large fraction of worldwide production. As a relatively recently domesticated …

The draft genome of Spiraea crenata L. (Rosaceae) – the first complete genome in tribe Spiraeeae

L Laczkó, S Jordán, S Póliska, HV Rácz, NA Nagy… - Scientific Data, 2024 - nature.com
Spiraea crenata L. is a deciduous shrub distributed across the Eurasian steppe zone. The
species is of cultural and horticultural importance and occurs in scattered populations …

Nightmare or delight: Taxonomic circumscription meets reticulate evolution in the phylogenomic era

ZT Jin, RGJ Hodel, DK Ma, H Wang, GN Liu… - Molecular Phylogenetics …, 2023 - Elsevier
Phylogenetic studies in the phylogenomics era have demonstrated that reticulate evolution
greatly impedes the accuracy of phylogenetic inference, and consequently can obscure …