A comprehensive survey of cryptography key management systems

S Rana, FK Parast, B Kelly, Y Wang, KB Kent - Journal of Information …, 2023 - Elsevier
Cryptographic methods have been extensively employed in various systems to address
security objectives, such as data confidentiality, authentication, and secure communication …

Fourth generation of next‐generation sequencing technologies: Promise and consequences

R Ke, M Mignardi, T Hauling, M Nilsson - Human mutation, 2016 - Wiley Online Library
In this review, we discuss the emergence of the fourth‐generation sequencing technologies
that preserve the spatial coordinates of RNA and DNA sequences with up to subcellular …

Efficient storage of high throughput DNA sequencing data using reference-based compression

MHY Fritz, R Leinonen, G Cochrane… - Genome research, 2011 - genome.cshlp.org
Data storage costs have become an appreciable proportion of total cost in the creation and
analysis of DNA sequence data. Of particular concern is that the rate of increase in DNA …

Countering gattaca: efficient and secure testing of fully-sequenced human genomes

P Baldi, R Baronio, E De Cristofaro, P Gasti… - Proceedings of the 18th …, 2011 - dl.acm.org
Recent advances in DNA sequencing technologies have put ubiquitous availability of fully
sequenced human genomes within reach. It is no longer hard to imagine the day when …

Compression of FASTQ and SAM format sequencing data

JK Bonfield, MV Mahoney - PloS one, 2013 - journals.plos.org
Storage and transmission of the data produced by modern DNA sequencing instruments has
become a major concern, which prompted the Pistoia Alliance to pose the …

A survey on data compression methods for biological sequences

M Hosseini, D Pratas, AJ Pinho - Information, 2016 - mdpi.com
The ever increasing growth of the production of high-throughput sequencing data poses a
serious challenge to the storage, processing and transmission of these data. As frequently …

Data compression for sequencing data

S Deorowicz, S Grabowski - Algorithms for Molecular Biology, 2013 - Springer
Post-Sanger sequencing methods produce tons of data, and there is a generalagreement
that the challenge to store and process them must be addressedwith data compression. In …

DNA sequence compression using adaptive particle swarm optimization-based memetic algorithm

Z Zhu, J Zhou, Z Ji, YH Shi - IEEE transactions on evolutionary …, 2011 - ieeexplore.ieee.org
With the rapid development of high-throughput DNA sequencing technologies, the amount
of DNA sequence data is accumulating exponentially. The huge influx of data creates new …

Evaluation and Comparison of Multiple Aligners for Next‐Generation Sequencing Data Analysis

J Shang, F Zhu, W Vongsangnak… - BioMed research …, 2014 - Wiley Online Library
Next‐generation sequencing (NGS) technology has rapidly advanced and generated the
massive data volumes. To align and map the NGS data, biologists often randomly select a …

High-throughput DNA sequence data compression

Z Zhu, Y Zhang, Z Ji, S He, X Yang - Briefings in bioinformatics, 2015 - academic.oup.com
The exponential growth of high-throughput DNA sequence data has posed great challenges
to genomic data storage, retrieval and transmission. Compression is a critical tool to address …