[HTML][HTML] A multi-method and structure-based in silico vaccine designing against Echinococcus granulosus through investigating enolase protein

MM Pourseif, M Yousefpour, M Aminianfar… - BioImpacts …, 2019 - ncbi.nlm.nih.gov
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Introduction: Hydatid disease is a ubiquitous parasitic zoonotic disease, which causes …

Considerations for the design and construction of a synthetic platform cell for biotechnological applications

PL Foley, ML Shuler - Biotechnology and Bioengineering, 2010 - Wiley Online Library
The design and construction of an artificial bacterial cell could revolutionize biotechnological
processes and technologies. A functional platform cell that can be easily customized for a …

Interrelations between the nucleotide context of human start AUG codon, N-end amino acids of the encoded protein and initiation of translation

OA Volkova, AV Kochetov - Journal of Biomolecular Structure and …, 2010 - Taylor & Francis
It is known that the recognition of AUG triplet by eukaryotic ribosomes as a translation start
site strongly depends on its nucleotide context. However, the relative significance of different …

Disorderness in Escherichia coli proteome: perception of folding fidelity and protein–protein interactions

B Kahali, TC Ghosh - Journal of Biomolecular Structure and …, 2013 - Taylor & Francis
Traditionally biased usage of synonymous codons renders selective advantage to proteins
expressed at high levels with a few exceptions like in Escherichia coli. Proteome-wide …

[PDF][PDF] Comparative studies of codon usage profile of Anisakis simplex (Nematoda) and Carassius gibelio (Prussian carp)

W Ahmed, S Gupta, I Mukherjee, V Babu… - Journal of …, 2022 - researchgate.net
Materials and Methods Sequence data retrieval: The complete CDS of C. gibelio (Prussian
carp) and A. simplex (Nematode) were retrieved from National Centre for Biotechnology …

Evolution of optimal codon choices in the family Enterobacteriaceae

A Iriarte, JD Baraibar, H Romero… - …, 2013 - microbiologyresearch.org
The Enterobacteriaceae are a large family of Proteobacteria that include many well-known
prokaryotic genera, such as Escherichia, Yersinia and Salmonella. The main ideas of …

Genome-wide codon usage profiling of ocular infective Chlamydia trachomatis serovars and drug target identification

A Sadhasivam, U Vetrivel - Journal of Biomolecular Structure and …, 2018 - Taylor & Francis
Chlamydia trachomatis (Ct) is a Gram-negative obligate intracellular bacteria and is a major
causative of infectious blindness and sexually transmitted diseases. Among the varied …

[HTML][HTML] Mode of photoexcited C60 fullerene involvement in potentiating cisplatin toxicity against drug-resistant L1210 cells

D Franskevych, S Prylutska, I Grynyuk, G Pasichnyk… - BioImpacts …, 2019 - ncbi.nlm.nih.gov
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Introduction: C 60 fullerene has received great attention as a candidate for biomedical …

Multiply expressed tRNA genes?

S Das, S Mitra, J Chakrabarti - Journal of Biomolecular Structure …, 2010 - Taylor & Francis
Some coding (mRNA) genes are known to express into several different amino-acid chains
by intron and exon shuffling. There are computational arguments that an analogous …

Selective constraints in yeast genes with differential expressivity: codon pair usage and mRNA stability perspectives

B Kahali, S Ahmad, TC Ghosh - Gene, 2011 - Elsevier
Protein translation has been elucidated to be dictated by evolutionary constraints, namely,
variations in tRNA availabilities and/or variations in codon–anticodon binding that is …