Evolutionary analysis of a complete chicken genome

Z Huang, Z Xu, H Bai, Y Huang… - Proceedings of the …, 2023 - National Acad Sciences
Microchromosomes are prevalent in nonmammalian vertebrates [PD Waters et al., Proc.
Natl. Acad. Sci. USA 118 (2021)], but a few of them are missing in bird genome assemblies …

Why do some vertebrates have microchromosomes?

K Srikulnath, SF Ahmad, W Singchat, T Panthum - Cells, 2021 - mdpi.com
With more than 70,000 living species, vertebrates have a huge impact on the field of biology
and research, including karyotype evolution. One prominent aspect of many vertebrate …

Fourth report on chicken genes and chromosomes 2022

J Smith, JM Alfieri, N Anthony, P Arensburger… - … and genome research, 2023 - karger.com
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …

Microchromosomes are building blocks of bird, reptile, and mammal chromosomes

PD Waters, HR Patel, A Ruiz-Herrera… - Proceedings of the …, 2021 - National Acad Sciences
Microchromosomes, once considered unimportant shreds of the chicken genome, are gene-
rich elements with a high GC content and few transposable elements. Their origin has been …

The American paddlefish genome provides novel insights into chromosomal evolution and bone mineralization in early vertebrates

P Cheng, Y Huang, Y Lv, H Du, Z Ruan… - Molecular Biology …, 2021 - academic.oup.com
Sturgeons and paddlefishes (Acipenseriformes) occupy the basal position of ray-finned
fishes, although they have cartilaginous skeletons as in Chondrichthyes. This evolutionary …

A chromosome-level genome assembly for the Silkie chicken resolves complete sequences for key chicken metabolic, reproductive, and immunity genes

F Zhu, ZT Yin, QS Zhao, YX Sun, YC Jie… - Communications …, 2023 - nature.com
A set of high-quality pan-genomes would help identify important genes that are still
hidden/incomplete in bird reference genomes. In an attempt to address these issues, we …

Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots

Z Huang, I De O. Furo, J Liu, V Peona… - Nature …, 2022 - nature.com
The karyotype of most birds has remained considerably stable during more than 100 million
years' evolution, except for some groups, such as parrots. The evolutionary processes and …

Three amphioxus reference genomes reveal gene and chromosome evolution of chordates

Z Huang, L Xu, C Cai, Y Zhou, J Liu… - Proceedings of the …, 2023 - National Acad Sciences
The slow-evolving invertebrate amphioxus has an irreplaceable role in advancing our
understanding of the vertebrate origin and innovations. Here we resolve the nearly complete …

A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

J Liu, Z Wang, J Li, L Xu, J Liu, S Feng, C Guo… - Genome …, 2021 - genome.cshlp.org
Emu and other ratites are more informative than any other birds in reconstructing the
evolution of the ancestral avian or vertebrate karyotype because of their much slower rate of …

A lizard is never late: Squamate genomics as a recent catalyst for understanding sex chromosome and microchromosome evolution

BJ Pinto, T Gamble, CH Smith, MA Wilson - Journal of Heredity, 2023 - academic.oup.com
In 2011, the first high-quality genome assembly of a squamate reptile (lizard or snake) was
published for the green anole. Dozens of genome assemblies were subsequently published …