cis-Regulatory Elements in Plant Development, Adaptation, and Evolution
cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …
spatiotemporal patterning of gene expression necessary for appropriate development and …
Cis-regulatory sequences in plants: their importance, discovery, and future challenges
The identification and characterization of cis-regulatory DNA sequences and how they
function to coordinate responses to developmental and environmental cues is of paramount …
function to coordinate responses to developmental and environmental cues is of paramount …
A complete telomere-to-telomere assembly of the maize genome
J Chen, Z Wang, K Tan, W Huang, J Shi, T Li, J Hu… - Nature …, 2023 - nature.com
A complete telomere-to-telomere (T2T) finished genome has been the long pursuit of
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
genomic research. Through generating deep coverage ultralong Oxford Nanopore …
Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters
Targeted engineering of plant gene expression holds great promise for ensuring food
security and for producing biopharmaceuticals in plants. However, this engineering requires …
security and for producing biopharmaceuticals in plants. However, this engineering requires …
Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules
The transcriptional regulatory structure of plant genomes remains poorly defined relative to
animals. It is unclear how many cis-regulatory elements exist, where these elements lie …
animals. It is unclear how many cis-regulatory elements exist, where these elements lie …
Transposable element influences on gene expression in plants
CD Hirsch, NM Springer - Biochimica et Biophysica Acta (BBA)-Gene …, 2017 - Elsevier
Transposable elements (TEs) comprise a major portion of many plant genomes and bursts
of TE movements cause novel genomic variation within species. In order to maintain proper …
of TE movements cause novel genomic variation within species. In order to maintain proper …
Nascent RNA sequencing reveals distinct features in plant transcription
Transcriptional regulation of gene expression is a major mechanism used by plants to confer
phenotypic plasticity, and yet compared with other eukaryotes or bacteria, little is known …
phenotypic plasticity, and yet compared with other eukaryotes or bacteria, little is known …
Transcripts from downstream alternative transcription start sites evade uORF-mediated inhibition of gene expression in Arabidopsis
Y Kurihara, Y Makita, M Kawashima… - Proceedings of the …, 2018 - National Acad Sciences
Plants adapt to alterations in light conditions by controlling their gene expression profiles.
Expression of light-inducible genes is transcriptionally induced by transcription factors such …
Expression of light-inducible genes is transcriptionally induced by transcription factors such …
Plant promoters and terminators for high-precision bioengineering
High-precision bioengineering and synthetic biology require fine-tuning gene expression at
both transcriptional and posttranscriptional levels. Gene transcription is tightly regulated by …
both transcriptional and posttranscriptional levels. Gene transcription is tightly regulated by …
The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated+ 1 nucleosome positioning and transcription start site determination in Arabidopsis
B Diego-Martin, J Pérez-Alemany… - Nucleic Acids …, 2022 - academic.oup.com
Eukaryotes have evolved multiple ATP-dependent chromatin remodelers to shape the
nucleosome landscape. We recently uncovered an evolutionarily conserved SWItch/Sucrose …
nucleosome landscape. We recently uncovered an evolutionarily conserved SWItch/Sucrose …