EnCPdock: a web-interface for direct conjoint comparative analyses of complementarity and binding energetics in inter-protein associations

G Biswas, D Mukherjee, N Dutta, P Ghosh… - Journal of Molecular …, 2023 - Springer
Context Protein–protein interaction (PPI) is a key component linked to virtually all cellular
processes. Be it an enzyme catalysis ('classic type functions' of proteins) or a signal …

Capturing a crucial 'disorder-to-order transition'at the heart of the coronavirus molecular pathology—triggered by highly persistent, interchangeable salt-bridges

S Roy, P Ghosh, A Bandyopadhyay, S Basu - Vaccines, 2022 - mdpi.com
The COVID-19 origin debate has greatly been influenced by genome comparison studies of
late, revealing the emergence of the Furin-like cleavage site at the S1/S2 junction of the …

New insights on the catalytic center of proteins from peptidylprolyl isomerase group based on the FOD‐M model

I Roterman, K Stapor… - Journal of Cellular …, 2023 - Wiley Online Library
Generating the structure of the hydrophobic core is based on the orientation of hydrophobic
residues towards the central part of the protein molecule with the simultaneous exposure of …

From the hydrophobic core to the globular-disorder interface: New challenges and insights into protein design

S Basu, D Chakravarty, Q Hou… - Frontiers in Molecular …, 2023 - frontiersin.org
The biophysical foundations of protein folding (Dill and MacCallum, 2012) still remain
largely unexplained despite the many years of intensive experimental (Dobson, 2004) and …

Artificial Intelligence based System in Protein Folding using Alphafold

P Srivastava, S Suyash… - … and Renewable Systems …, 2022 - ieeexplore.ieee.org
Artificial Intelligence has a high potential to solve many real-world problems. In the recent
years researchers are dealing with one of the biggest complications in biology, which is …

Plot-Tools in Protein Structure Validations: From the Ramachandran Plot to the Complementarity Plot (Commentary)

S Basu - 2023 - preprints.org
A picture is worth a thousand words. Many branches of Science have been historically
benefited with plots and visual analyses (lately, image processing and deep learning) …

[PDF][PDF] Rozprawa doktorska

DN INŻYNIERYJNO-TECHNICZNYCH - repo.pw.edu.pl
Water, one of the most valuable natural resources, undergoes constant monitoring due to its
crucial role in Earth's life and the forecasting of extreme weather phenomena such as …