Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics

GS Gulati, JP D'Silva, Y Liu, L Wang… - … Reviews Molecular Cell …, 2024 - nature.com
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …

The extracellular matrix in solid tumor immunotherapy

Y Cho, J Doh - Trends in Immunology, 2024 - cell.com
The extracellular matrix (ECM) of solid tumors impacts the antitumor activities of CD8+ T and
natural killer (NK) cells in a variety of ways. Cell motility is restricted by the tumor ECM which …

Open-ST: High-resolution spatial transcriptomics in 3D

M Schott, D León-Periñán, E Splendiani, L Strenger… - Cell, 2024 - cell.com
Spatial transcriptomics (ST) methods unlock molecular mechanisms underlying tissue
development, homeostasis, or disease. However, there is a need for easy-to-use, high …

Moving closer towards a comprehensive view of tumor biology and microarchitecture using spatial transcriptomics

YM Park, DC Lin - nature communications, 2023 - nature.com
Spatial transcriptomic profiling of cancer has enabled spatial delineation of malignant
transcriptional heterogeneity, intercellular communication, and organization of …

Single-cell transcriptome profiles the heterogeneity of tumor cells and microenvironments for different pathological endometrial cancer and identifies specific sensitive …

F Ren, L Wang, Y Wang, J Wang, Y Wang… - Cell Death & …, 2024 - nature.com
Endometrial cancer (EC) is a highly heterogeneous malignancy characterized by varied
pathology and prognoses, and the heterogeneity of its cancer cells and the tumor …

Molecular correlates for HPV-negative head and neck cancer engraftment prognosticate patient outcomes

M Waas, C Karamboulas, BZ Wu, S Khan… - Nature …, 2024 - nature.com
There is a pressing need to improve risk stratification and treatment selection for HPV-
negative head and neck squamous cell carcinoma (HNSCC) due to the adverse side effects …

Macrophage-driven cardiac inflammation and healing: insights from homeostasis and myocardial infarction

W Zuo, R Sun, Z Ji, G Ma - Cellular & Molecular Biology Letters, 2023 - Springer
Early and prompt reperfusion therapy has markedly improved the survival rates among
patients enduring myocardial infarction (MI). Nonetheless, the resulting adverse remodeling …

Biomarker discovery in hepatocellular carcinoma (HCC) for personalized treatment and enhanced prognosis

B Yu, W Ma - Cytokine & Growth Factor Reviews, 2024 - Elsevier
Hepatocellular carcinoma (HCC) is a leading contributor to cancer-related deaths worldwide
and presents significant challenges in diagnosis and treatment due to its heterogeneous …

Development and validation of a novel disulfidptosis-related lncRNAs signature in patients with HPV-negative oral squamous cell carcinoma

F Yang, X Niu, M Zhou, W Li - Scientific Reports, 2024 - nature.com
Disulfidptosis is a recently identified mode of regulated cell death. Regulating disulfidptosis
in carcinoma is a promising therapeutic approach. Long non-coding RNAs (lncRNAs) have …

[HTML][HTML] Defining and modeling dynamic spatial heterogeneity within tumor microenvironments

B Bareham, M Dibble, M Parsons - Current Opinion in Cell Biology, 2024 - Elsevier
Many solid tumors exhibit significant genetic, cellular, and biophysical heterogeneity which
dynamically evolves during disease progression and after treatment. This constant flux in …