MicroRNAs as the sentinels of redox and hypertrophic signalling

F Kolodziej, B McDonagh, N Burns… - International Journal of …, 2022 - mdpi.com
Oxidative stress and inflammation are associated with skeletal muscle function decline with
ageing or disease or inadequate exercise and/or poor diet. Paradoxically, reactive oxygen …

Idiopathic inflammatory myopathy and non-coding RNA

Y Yang, H GuangXuan, W GenMeng… - Frontiers in …, 2023 - frontiersin.org
Idiopathic inflammatory myopathies (IIMs) are common autoimmune diseases that affect
skeletal muscle quality and function. The lack of an early diagnosis and treatment can lead …

Signal and noise in metabarcoding data

Z Gold, AO Shelton, HR Casendino, J Duprey… - Plos one, 2023 - journals.plos.org
Metabarcoding is a powerful molecular tool for simultaneously surveying hundreds to
thousands of species from a single sample, underpinning microbiome and environmental …

[HTML][HTML] A blueprint for a synthetic genetic feedback optimizer

A Gyorgy, A Menezes, M Arcak - Nature communications, 2023 - nature.com
Biomolecular control enables leveraging cells as biomanufacturing factories. Despite recent
advancements, we currently lack genetically encoded modules that can be deployed to …

The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian

DE Weidemann, J Holehouse, A Singh, R Grima… - Science …, 2023 - science.org
Gene expression inherently gives rise to stochastic variation (“noise”) in the production of
gene products. Minimizing noise is crucial for ensuring reliable cellular functions. However …

Feedforward genetic circuits regulate the precision of event timing

S Dey, S Kannoly, P Bokes… - 2021 European …, 2021 - ieeexplore.ieee.org
Triggering of cellular events often relies on the level of a key gene product crossing a critical
threshold. Achieving precision in event timing despite noisy gene expression facilitates high …

Context-dependent stability and robustness of genetic toggle switches with leaky promoters

A Gyorgy - Life, 2021 - mdpi.com
Multistable switches are ubiquitous building blocks in both systems and synthetic biology.
Given their central role, it is thus imperative to understand how their fundamental properties …

The effect of microRNA on protein variability and gene expression fidelity

R Fan, A Hilfinger - Biophysical Journal, 2023 - cell.com
Small regulatory RNA molecules such as microRNA modulate gene expression through
inhibiting the translation of messenger RNA (mRNA). Such posttranscriptional regulation …

Stability and robustness of unbalanced genetic toggle switches in the presence of scarce resources

C Yong, A Gyorgy - Life, 2021 - mdpi.com
While the vision of synthetic biology is to create complex genetic systems in a rational
fashion, system-level behaviors are often perplexing due to the context-dependent dynamics …

The role of incoherent feedforward circuits in regulating precision of event timing

S Dey, S Kannoly, P Bokes, JJ Dennehy, A Singh - bioRxiv, 2020 - biorxiv.org
Triggering of cellular events often relies on the level of a key gene product crossing a critical
threshold. Achieving precision in event timing in spite of noisy gene expression facilitates …