Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D Jin, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

A brief history of de novo protein design: minimal, rational, and computational

DN Woolfson - Journal of Molecular Biology, 2021 - Elsevier
Protein design has come of age, but how will it mature? In the 1980s and the 1990s, the
primary motivation for de novo protein design was to test our understanding of the …

Phosphoantigens glue butyrophilin 3A1 and 2A1 to activate Vγ9Vδ2 T cells

L Yuan, X Ma, Y Yang, Y Qu, X Li, X Zhu, W Ma, J Duan… - Nature, 2023 - nature.com
In both cancer and infections, diseased cells are presented to human Vγ9Vδ2 T cells
through an 'inside out'signalling process whereby structurally diverse phosphoantigen (pAg) …

NDP52 acts as a redox sensor in PINK1/Parkin‐mediated mitophagy

T Kataura, EG Otten, Y Rabanal‐Ruiz… - The EMBO …, 2023 - embopress.org
Mitophagy, the elimination of mitochondria via the autophagy‐lysosome pathway, is
essential for the maintenance of cellular homeostasis. The best characterised mitophagy …

Molecular structure of soluble vimentin tetramers

PJ Vermeire, AV Lilina, HM Hashim, L Dlabolová… - Scientific Reports, 2023 - nature.com
Intermediate filaments (IFs) are essential constituents of the metazoan cytoskeleton. A vast
family of cytoplasmic IF proteins are capable of self-assembly from soluble tetrameric …

Socket2: a program for locating, visualizing and analyzing coiled-coil interfaces in protein structures

P Kumar, DN Woolfson - Bioinformatics, 2021 - academic.oup.com
Motivation Protein–protein interactions are central to all biological processes. One frequently
observed mode of such interactions is the α-helical coiled coil (CC). Thus, an ability to …

Structural insights into plasmalemma vesicle-associated protein (PLVAP): implications for vascular endothelial diaphragms and fenestrae

TH Chang, FL Hsieh, X Gu… - Proceedings of the …, 2023 - National Acad Sciences
In many organs, small openings across capillary endothelial cells (ECs) allow the diffusion
of low–molecular weight compounds and small proteins between the blood and tissue …

Human septins organize as octamer-based filaments and mediate actin-membrane anchoring in cells

CS Martins, C Taveneau, G Castro-Linares… - Journal of Cell …, 2022 - rupress.org
Septins are cytoskeletal proteins conserved from algae and protists to mammals. A unique
feature of septins is their presence as heteromeric complexes that polymerize into filaments …

Molecular interactions driving intermediate filament assembly

PJ Vermeire, G Stalmans, AV Lilina, J Fiala, P Novak… - Cells, 2021 - mdpi.com
Given the role of intermediate filaments (IFs) in normal cell physiology and scores of IF-
linked diseases, the importance of understanding their molecular structure is beyond doubt …

Stability profile of vimentin rod domain

AV Lilina, S Leekens, HM Hashim, PJ Vermeire… - Protein …, 2022 - Wiley Online Library
Intermediate filaments (IFs) form an essential part of the metazoan cytoskeleton. Despite a
long history of research, a proper understanding of their molecular architecture and …