A comprehensive metabolic map for production of bio-based chemicals

SY Lee, HU Kim, TU Chae, JS Cho, JW Kim, JH Shin… - Nature …, 2019 - nature.com
Production of industrial chemicals using renewable biomass feedstock is becoming
increasingly important to address limited fossil resources, climate change and other …

Cell‐free metabolic engineering: biomanufacturing beyond the cell

QM Dudley, AS Karim, MC Jewett - Biotechnology journal, 2015 - Wiley Online Library
Industrial biotechnology and microbial metabolic engineering are poised to help meet the
growing demand for sustainable, low‐cost commodity chemicals and natural products, yet …

[HTML][HTML] RetroPath2. 0: a retrosynthesis workflow for metabolic engineers

B Delépine, T Duigou, P Carbonell, JL Faulon - Metabolic engineering, 2018 - Elsevier
Synthetic biology applied to industrial biotechnology is transforming the way we produce
chemicals. However, despite advances in the scale and scope of metabolic engineering, the …

Basic and applied uses of genome‐scale metabolic network reconstructions of Escherichia coli

D McCloskey, BØ Palsson, AM Feist - Molecular systems biology, 2013 - embopress.org
The genome‐scale model (GEM) of metabolism in the bacterium Escherichia coli K‐12 has
been in development for over a decade and is now in wide use. GEM‐enabled studies of E …

Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency

SW Seo, JS Yang, I Kim, J Yang, BE Min, S Kim… - Metabolic …, 2013 - Elsevier
Precise prediction of prokaryotic translation efficiency can provide valuable information for
optimizing bacterial host for the production of biochemical compounds or recombinant …

Bioprivileged molecules: creating value from biomass

BH Shanks, PL Keeling - Green Chemistry, 2017 - pubs.rsc.org
The petrochemical industry is built on C2–C4 alkenes and aromatics as intermediate
molecules, which are converted to a range of products. This industry is highly developed …

Biosynthesis and synthetic biology of psychoactive natural products

CS Jamieson, J Misa, Y Tang… - Chemical Society Reviews, 2021 - pubs.rsc.org
Psychoactive natural products play an integral role in the modern world. The tremendous
structural complexity displayed by such molecules confers diverse biological activities of …

[HTML][HTML] Multi-omics and metabolic modelling pipelines: challenges and tools for systems microbiology

M Fondi, P Liò - Microbiological research, 2015 - Elsevier
Integrated-omics approaches are quickly spreading across microbiology research labs,
leading to (i) the possibility of detecting previously hidden features of microbial cells like …

Progress toward improving ethanol production through decreased glycerol generation in Saccharomyces cerevisiae by metabolic and genetic engineering …

MP Naghshbandi, M Tabatabaei, M Aghbashlo… - … and Sustainable Energy …, 2019 - Elsevier
Bioethanol, a prominent biofuel mostly produced industrially by the yeast Saccharomyces
cerevisiae, has been among the main pillars of sustainable development in the …

Multivariate modular metabolic engineering for pathway and strain optimization

BW Biggs, B De Paepe, CNS Santos, M De Mey… - Current opinion in …, 2014 - Elsevier
Highlights•The rationale and underlying principles of multivariate modular metabolic
engineering (MMME) are given.•Several examples highlighting MMME's pathway …