Analytical methods in untargeted metabolomics: state of the art in 2015

A Alonso, S Marsal, A Julià - Frontiers in bioengineering and …, 2015 - frontiersin.org
Metabolomics comprises the methods and techniques that are used to measure the small
molecule composition of biofluids and tissues, and is actually one of the most rapidly …

Recent advances in triterpenoid pathway elucidation and engineering

S Dinday, S Ghosh - Biotechnology Advances, 2023 - Elsevier
Triterpenoids are among the most assorted class of specialized metabolites found in all the
taxa of living organisms. Triterpenoids are the leading active ingredients sourced from plant …

A specialized metabolic network selectively modulates Arabidopsis root microbiota

AC Huang, T Jiang, YX Liu, YC Bai, J Reed, B Qu… - Science, 2019 - science.org
INTRODUCTION Specialized metabolism is a feature of plant evolution and adaption. Plant-
specialized metabolites have ecological functions, mediating interactions between plants …

Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae

C Hawkins, D Ginzburg, K Zhao… - Journal of integrative …, 2021 - Wiley Online Library
To understand and engineer plant metabolism, we need a comprehensive and accurate
annotation of all metabolic information across plant species. As a step towards this goal, we …

ePlant: visualizing and exploring multiple levels of data for hypothesis generation in plant biology

J Waese, J Fan, A Pasha, H Yu, G Fucile, R Shi… - The Plant …, 2017 - academic.oup.com
A big challenge in current systems biology research arises when different types of data must
be accessed from separate sources and visualized using separate tools. The high cognitive …

MaizeGDB 2018: the maize multi-genome genetics and genomics database

JL Portwood, MR Woodhouse, EK Cannon… - Nucleic acids …, 2019 - academic.oup.com
Since its 2015 update, MaizeGDB, the Maize Genetics and Genomics database, has
expanded to support the sequenced genomes of many maize inbred lines in addition to the …

Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants

P Schläpfer, P Zhang, C Wang, T Kim, M Banf… - Plant …, 2017 - academic.oup.com
Plant metabolism underpins many traits of ecological and agronomic importance. Plants
produce numerous compounds to cope with their environments but the biosynthetic …

Biosynthesis, regulation, and domestication of bitterness in cucumber

Y Shang, Y Ma, Y Zhou, H Zhang, L Duan, H Chen… - science, 2014 - science.org
Cucurbitacins are triterpenoids that confer a bitter taste in cucurbits such as cucumber,
melon, watermelon, squash, and pumpkin. These compounds discourage most pests on the …

dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation

L Huang, H Zhang, P Wu, S Entwistle, X Li… - Nucleic Acids …, 2018 - academic.oup.com
Carbohydrate-active enzyme (CAZymes) are not only the most important enzymes for
bioenergy and agricultural industries, but also very important for human health, in that …

Phytohormones in microalgae: a new opportunity for microalgal biotechnology?

Y Lu, J Xu - Trends in plant science, 2015 - cell.com
Phytohormones, including auxin, abscisic acid (ABA), cytokinin (CK), ethylene (ET), and
gibberellins (GAs), have been found in a broad spectrum of microalgal lineages. Although …