[1] Probing RNA structure and RNA-ligand complexes with chemical probes

C Brunel, P Romby - 2000 - Elsevier
The diversity of RNA functions demands that these molecules be capable of adopting
different conformations that will provide diverse points of contact for the selective recognition …

Metal ion binding to RNA

P Auffinger, N Grover, E Westhof - 2011 - books.rsc.org
RNA crystal structures have provided a wealth of information on localized metal ions that are
bound to specific sites, such as the RNA deep groove, the Hoogsteen face of guanine …

Tools for the automatic identification and classification of RNA base pairs

H Yang, F Jossinet, N Leontis, L Chen… - Nucleic acids …, 2003 - academic.oup.com
Three programs have been developed to aid in the classification and visualization of RNA
structure. BPViewer provides a web interface for displaying three-dimensional (3D) …

The crystal structure of UUCG tetraloop

E Ennifar, A Nikulin, S Tishchenko, A Serganov… - Journal of molecular …, 2000 - Elsevier
All large structured RNAs contain hairpin motifs made of a stem closed by several looped
nucleotides. The most frequent loop motif is the UUCG one. This motif belongs to the …

[PDF][PDF] Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes

P Auffinger, E Westhof - Journal of Molecular Biology, 1999 - researchgate.net
The tRNA anticodon loops always comprise seven nucleotides and is involved in many
recognition processes with proteins and RNA fragments. We have investigated the nature …

Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs

JC Lee, RR Gutell - Journal of molecular biology, 2004 - Elsevier
In addition to the canonical base-pairs comprising the standard Watson–Crick (C: G and U:
A) and wobble U: G conformations, an analysis of the base-pair types and conformations in …

5 S rRNA: structure and interactions

M Szymański, MZ BARCISZEWSKA… - Biochemical …, 2003 - portlandpress.com
5S rRNA is an integral component of the large ribosomal subunit in all known organisms.
Despite many years of intensive study, the function of 5S rRNA in the ribosome remains …

[HTML][HTML] High-resolution small RNA structures from exact nuclear Overhauser enhancement measurements without additional restraints

PJ Nichols, MA Henen, A Born, D Strotz… - Communications …, 2018 - nature.com
RNA not only translates the genetic code into proteins, but also carries out important cellular
functions. Understanding such functions requires knowledge of the structure and dynamics …

Dynamics of the RNA hairpin GNRA tetraloop

M Menger, F Eckstein, D Porschke - Biochemistry, 2000 - ACS Publications
The dynamics of RNA hairpin tetraloops of the GNRA type [sequence G-any ribonucleotide
(N)-purine (R)-A] was analyzed by fluorescence spectroscopy and by fluorescence-detected …

5S ribosomal RNA database Y2K

M Szymanski, MZ Barciszewska… - Nucleic Acids …, 2000 - academic.oup.com
This paper presents the updated version (Y2K) of the database of ribosomal 5S ribonucleic
acids (5S rRNA) and their genes (5S rDNA), http://rose. man/poznan. pl/5SData/index. html …