Viral quasispecies evolution

E Domingo, J Sheldon, C Perales - Microbiology and Molecular …, 2012 - Am Soc Microbiol
Evolution of RNA viruses occurs through disequilibria of collections of closely related mutant
spectra or mutant clouds termed viral quasispecies. Here we review the origin of the …

Viral fitness: definitions, measurement, and current insights

AR Wargo, G Kurath - Current opinion in virology, 2012 - Elsevier
Viral fitness is an active area of research, with recent work involving an expanded number of
human, non-human vertebrate, invertebrate, plant, and bacterial viruses. Many publications …

Host alternation of chikungunya virus increases fitness while restricting population diversity and adaptability to novel selective pressures

LL Coffey, M Vignuzzi - Journal of virology, 2011 - Am Soc Microbiol
The mechanisms by which RNA arboviruses, including chikungunya virus (CHIKV), evolve
and maintain the ability to infect vertebrate and invertebrate hosts are poorly understood. To …

Whole-genome characterization of human and simian immunodeficiency virus intrahost diversity by ultradeep pyrosequencing

BN Bimber, DM Dudley, M Lauck, EA Becker… - Journal of …, 2010 - Am Soc Microbiol
Rapid evolution and high intrahost sequence diversity are hallmarks of human and simian
immunodeficiency virus (HIV/SIV) infection. Minor viral variants have important implications …

[HTML][HTML] Rethinking quasispecies theory: From fittest type to cooperative consortia

LP Villarreal, G Witzany - World journal of biological chemistry, 2013 - ncbi.nlm.nih.gov
Recent investigations surprisingly indicate that single RNA “stem-loops” operate solely by
chemical laws that act without selective forces, and in contrast, self-ligated consortia of RNA …

High genetic diversity and adaptive potential of two simian hemorrhagic fever viruses in a wild primate population

AL Bailey, M Lauck, A Weiler, SD Sibley, JM Dinis… - PloS one, 2014 - journals.plos.org
Key biological properties such as high genetic diversity and high evolutionary rate enhance
the potential of certain RNA viruses to adapt and emerge. Identifying viruses with these …

Genetic diversity accelerates canine distemper virus adaptation to ferrets

O Siering, M Langbein, M Herrmann, K Wittwer… - Journal of …, 2024 - journals.asm.org
ABSTRACT RNA viruses adapt rapidly to new host environments by generating highly
diverse genome sets, so-called “quasispecies.” Minor genetic variants promote their rapid …

Influence of mutation and recombination on HIV-1 in vitro fitness recovery

M Arenas, R Lorenzo-Redondo… - Molecular Phylogenetics …, 2016 - Elsevier
The understanding of the evolutionary processes underlying HIV-1 fitness recovery is
fundamental for HIV-1 pathogenesis, antiretroviral treatment and vaccine design. It is known …

Have cells harboring the HIV reservoir been immunoedited?

SH Huang, CD McCann, TM Mota, C Wang… - Frontiers in …, 2019 - frontiersin.org
Immunoediting is an important concept in oncology, delineating the mechanisms through
which tumors are selected for resistance to immune-mediated elimination. The recent …

Dynamics of In Vitro Fitness Recovery of HIV-1

R Lorenzo-Redondo, AV Bordería… - Journal of …, 2011 - Am Soc Microbiol
The study on the evolutionary consequences of an RNA viral population's fluctuations can
be approached by in vitro experiments. This work describes the fitness recovery of HIV-1 …