Molecular epidemiology of HIV-1 infection in Europe: An overview
A Beloukas, A Psarris, P Giannelou, E Kostaki… - Infection, Genetics and …, 2016 - Elsevier
Abstract Human Immunodeficiency Virus type 1 (HIV-1) is characterised by vast genetic
diversity. Globally circulating HIV-1 viruses are classified into distinct phylogenetic strains …
diversity. Globally circulating HIV-1 viruses are classified into distinct phylogenetic strains …
The origin and molecular epidemiology of HIV
M Peeters, M Jung, A Ayouba - Expert review of anti-infective …, 2013 - Taylor & Francis
HIV-1 in humans resulted from at least four cross-species transmissions of simian
immunodeficiency viruses (SIVs) from chimpanzees and gorillas in West Central Africa …
immunodeficiency viruses (SIVs) from chimpanzees and gorillas in West Central Africa …
COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification
D Struck, G Lawyer, AM Ternes, JC Schmit… - Nucleic acids …, 2014 - academic.oup.com
Viral sequence classification has wide applications in clinical, epidemiological, structural
and functional categorization studies. Most existing approaches rely on an initial alignment …
and functional categorization studies. Most existing approaches rely on an initial alignment …
[HTML][HTML] Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other …
Background To investigate differences in pathogenesis, diagnosis and resistance pathways
between HIV-1 subtypes, an accurate subtyping tool for large datasets is needed. We aimed …
between HIV-1 subtypes, an accurate subtyping tool for large datasets is needed. We aimed …
Impact of Early Pandemic Stage Mutations on Molecular Dynamics of SARS-CoV-2 Mpro
O Sheik Amamuddy, GM Verkhivker… - Journal of chemical …, 2020 - ACS Publications
A new coronavirus (SARS-CoV-2) is a global threat to world health and economy. Its dimeric
main protease (Mpro), which is required for the proteolytic cleavage of viral precursor …
main protease (Mpro), which is required for the proteolytic cleavage of viral precursor …
VIRULIGN: fast codon-correct alignment and annotation of viral genomes
Virus sequence data are an essential resource for reconstructing spatiotemporal dynamics
of viral spread as well as to inform treatment and prevention strategies. However, the …
of viral spread as well as to inform treatment and prevention strategies. However, the …
Consequences of HIV infection in the bone marrow niche
CL Herd, J Mellet, T Mashingaidze, C Durandt… - Frontiers in …, 2023 - frontiersin.org
Dysregulation of the bone marrow niche resulting from the direct and indirect effects of HIV
infection contributes to haematological abnormalities observed in HIV patients. The bone …
infection contributes to haematological abnormalities observed in HIV patients. The bone …
[HTML][HTML] HIV-1 subtype B: Traces of a pandemic
DM Junqueira, SE de Matos Almeida - Virology, 2016 - Elsevier
Human migration is a major process that shaped the origin and dissemination of HIV. Within
HIV-1, subtype B (HIV-1B) is the most disseminated variant and it is assumed to be the …
HIV-1, subtype B (HIV-1B) is the most disseminated variant and it is assumed to be the …
[HTML][HTML] The global spread of HIV-1 subtype B epidemic
Human immunodeficiency virus type 1 (HIV-1) was discovered in the early 1980s when the
virus had already established a pandemic. For at least three decades the epidemic in the …
virus had already established a pandemic. For at least three decades the epidemic in the …
The impact of HIV-1 within-host evolution on transmission dynamics
Highlights•HIV-1 within-host evolution is short-sighted and favours more virulent
viruses.•Systemic HIV-1 infection is mainly established by a single variant …
viruses.•Systemic HIV-1 infection is mainly established by a single variant …