Two-locus sampling probabilities have played a central role in devising an efficient composite-likelihood method for estimating fine-scale recombination rates. Due to …
Population demographic history may be learned from contemporary genetic variation data. Methods based on aggregating the statistics of many single loci into an allele frequency …
JS Paul, YS Song - Genetics, 2010 - academic.oup.com
The multilocus conditional sampling distribution (CSD) describes the probability that an additionally sampled DNA sequence is of a certain type, given that a collection of sequences …
Recombination is a powerful evolutionary process that shapes the genetic diversity observed in the populations of many species. Reconstructing genealogies in the presence …
M Favero, PA Jenkins - arXiv preprint arXiv:2312.17406, 2023 - arxiv.org
Wright-Fisher diffusions and their dual ancestral graphs occupy a central role in the study of allele frequency change and genealogical structure, and they provide expressions, explicit …
A Bhaskar, YS Song - Advances in Applied Probability, 2012 - cambridge.org
Obtaining a closed-form sampling distribution for the coalescent with recombination is a challenging problem. In the case of two loci, a new framework based on an asymptotic …
Duality plays an important role in population genetics. It can relate results from forwards-in- time models of allele frequency evolution with those of backwards-in-time genealogical …
PA Jenkins, YS Song - The annals of applied probability: an official …, 2010 - ncbi.nlm.nih.gov
Ewens sampling formula (ESF) is a one-parameter family of probability distributions with a number of intriguing combinatorial connections. This elegant closed-form formula first arose …
Widely used models in genetics include the Wright-Fisher diffusion and its moment dual, Kingman's coalescent. Each has a multilocus extension but under neither extension is the …