High throughput sequencing for plant virus detection and discovery

DEV Villamor, T Ho, M Al Rwahnih, RR Martin… - …, 2019 - Am Phytopath Society
Over the last decade, virologists have discovered an unprecedented number of viruses
using high throughput sequencing (HTS), which led to the advancement of our knowledge …

Rice stripe virus: Exploring Molecular Weapons in the Arsenal of a Negative-Sense RNA Virus

Y Xu, S Fu, X Tao, X Zhou - Annual Review of Phytopathology, 2021 - annualreviews.org
Rice stripe disease caused by Rice stripe virus (RSV) is one of the most devastating plant
viruses of rice and causes enormous losses in production. RSV is transmitted from plant to …

Genome-wide variation in potyviruses

D Nigam, K LaTourrette, PFN Souza… - Frontiers in Plant …, 2019 - frontiersin.org
Potyviruses (family Potyviridae, genus Potyvirus) are the result of an initial radiation event
that occurred 6,600 years ago. The genus currently consists of 167 species that infect …

Deep sequencing for discovery and evolutionary analysis of plant viruses

MJ Roossinck - Virus research, 2017 - Elsevier
The advent of next generation sequencing (NGS), or deep sequencing, has allowed great
advances to be made in discovery, diagnostics, and evolutionary studies in plant viruses …

Comparison of high throughput sequencing to standard protocols for virus detection in berry crops

DEV Villamor, KE Keller, RR Martin… - Plant …, 2022 - Am Phytopath Society
We completed a comprehensive study comparing virus detection between high throughput
sequencing (HTS) and standard protocols in 30 berry selections (12 Fragaria, 10 Vaccinium …

SNP discovery of Korean short day onion inbred lines using double digest restriction site-associated DNA sequencing

JH Lee, S Natarajan, MK Biswas, K Shirasawa… - PloS one, 2018 - journals.plos.org
Onion (Allium cepa L.) is an economically important vegetable crop around the world.
Genetic and genomic research into various onion accessions will provide insights into the …

Red sea bream iridovirus infection in cage farmed Asian sea bass (Lates calcarifer): Insights into the pathology, epizootiology, and genetic diversity

TG Sumithra, SRK Sharma, L Neelima, NR Dhanutha… - Aquaculture, 2022 - Elsevier
Red sea bream iridovirus (RSIV) is an emerging viral pathogen having significant socio-
economic and environmental impacts on marine and brackish aquaculture systems. The …

De Novo SNP Discovery and Genotyping of Iranian Pimpinella Species Using ddRAD Sequencing

S Mehravi, GA Ranjbar, G Mirzaghaderi… - Agronomy, 2021 - mdpi.com
The species of Pimpinella, one of the largest genera of the family Apiaceae, are traditionally
cultivated for medicinal purposes. In this study, high-throughput double digest restriction-site …

The population structure of Rose rosette virus in the USA

A Katsiani, D Stainton, K Lamour… - Journal of General …, 2020 - microbiologyresearch.org
Rose rosette virus (RRV)(genus Emaravirus) is the causal agent of the homonymous
disease, the most destructive malady of roses in the USA. Although the importance of the …

Genomic variations in the 3′‐termini of Rice stripe virus in the rotation between vector insect and host plant

W Zhao, Z Xu, X Zhang, M Yang, L Kang, R Liu… - New …, 2018 - Wiley Online Library
A large number of plant RNA viruses circulate between plants and insects. For RNA viruses,
host alternations may impose a differential selective pressure on viral populations and …