Virus-induced T cell-mediated heterologous immunity and vaccine development

K Balz, L Trassl, V Härtel, PP Nelson… - Frontiers in …, 2020 - frontiersin.org
Heterologous immunity (HI) is a consequence of an encounter with a specific antigen, which
can alter the subsequent immune response to a different antigen. This can happen at the …

Vaccination and heterologous immunity: educating the immune system

A Gil, LL Kenney, R Mishra, LB Watkin… - Transactions of the …, 2015 - academic.oup.com
This review discusses three inter-related topics:(1) the immaturity of the neonatal and infant
immune response;(2) heterologous immunity, where prior infection history with unrelated …

Interpreting T-cell cross-reactivity through structure: implications for TCR-based cancer immunotherapy

DA Antunes, MM Rigo, MV Freitas… - Frontiers in …, 2017 - frontiersin.org
Immunotherapy has become one of the most promising avenues for cancer treatment,
making use of the patient's own immune system to eliminate cancer cells. Clinical trials with …

CrossDome: an interactive R package to predict cross-reactivity risk using immunopeptidomics databases

AF Fonseca, DA Antunes - Frontiers in Immunology, 2023 - frontiersin.org
T-cell-based immunotherapies hold tremendous potential in the fight against cancer, thanks
to their capacity to specifically targeting diseased cells. Nevertheless, this potential has been …

Structural analysis of cancer-relevant TCR-CD3 and peptide-MHC complexes by cryoEM

K Saotome, D Dudgeon, K Colotti, MJ Moore… - Nature …, 2023 - nature.com
The recognition of antigenic peptide-MHC (pMHC) molecules by T-cell receptors (TCR)
initiates the T-cell mediated immune response. Structural characterization is key for …

General prediction of peptide-MHC binding modes using incremental docking: a proof of concept

DA Antunes, D Devaurs, M Moll, G Lizée, LE Kavraki - Scientific reports, 2018 - nature.com
The class I major histocompatibility complex (MHC) is capable of binding peptides derived
from intracellular proteins and displaying them at the cell surface. The recognition of these …

Quantification and prediction of T-cell cross-reactivity through experimental and computational methods

DA Antunes, BM Baker, M Cornberg… - Frontiers in …, 2024 - frontiersin.org
T-cell receptor (TCR) molecules play a central role in adaptive cellular immunity, enabling T-
cell lymphocytes to recognize peptide-loaded Major Histocompatibility Complexes (pMHCs) …

APE-gen: A fast method for generating ensembles of bound peptide-MHC conformations

JR Abella, DA Antunes, C Clementi, LE Kavraki - Molecules, 2019 - mdpi.com
The Class I Major Histocompatibility Complex (MHC) is a central protein in immunology as it
binds to intracellular peptides and displays them at the cell surface for recognition by T-cells …

DockTope: a Web-based tool for automated pMHC-I modelling

M Menegatti Rigo, D Amaral Antunes… - Scientific reports, 2015 - nature.com
The immune system is constantly challenged, being required to protect the organism against
a wide variety of infectious pathogens and, at the same time, to avoid autoimmune disorders …

Charge-based interactions through peptide position 4 drive diversity of antigen presentation by human leukocyte antigen class I molecules

KR Jackson, DA Antunes, AH Talukder, AR Maleki… - PNAS …, 2022 - academic.oup.com
Human leukocyte antigen class I (HLA-I) molecules bind and present peptides at the cell
surface to facilitate the induction of appropriate CD8+ T cell-mediated immune responses to …