[HTML][HTML] Recent advances in the theory and molecular simulation of biological electron transfer reactions

J Blumberger - Chemical reviews, 2015 - ACS Publications
1. INTRODUCTION AND OVERVIEW The transfer and transport of electrons through
biological matter is one of the key steps underlying cellular energy harvesting, storage, and …

Time-dependent density-functional theory: concepts and applications

CA Ullrich - 2011 - books.google.com
Time-dependent density-functional theory (TDDFT) describes the quantum dynamics of
interacting electronic many-body systems formally exactly and in a practical and efficient …

[HTML][HTML] DFTB+, a software package for efficient approximate density functional theory based atomistic simulations

B Hourahine, B Aradi, V Blum, F Bonafe… - The Journal of …, 2020 - pubs.aip.org
DFTB+ is a versatile community developed open source software package offering fast and
efficient methods for carrying out atomistic quantum mechanical simulations. By …

Density-functional tight-binding: basic concepts and applications to molecules and clusters

F Spiegelman, N Tarrat, J Cuny, L Dontot… - … in physics: X, 2020 - Taylor & Francis
The scope of this article is to present an overview of the Density Functional based Tight
Binding (DFTB) method and its applications. The paper introduces the basics of DFTB and …

Density-functional tight-binding for beginners

P Koskinen, V Mäkinen - Computational Materials Science, 2009 - Elsevier
This article is a pedagogical introduction to density-functional tight-binding (DFTB) method.
We derive it from the density-functional theory, give the details behind the tight-binding …

Time-dependent density functional theory

MAL Marques, EKU Gross - A Primer in Density Functional Theory, 2003 - Springer
Time-dependent density-functional theory (TDDFT) extends the basic ideas of ground-state
density-functional theory (DFT) to the treatment of excitations and of more general time …

Nonadiabatic molecular dynamics for thousand atom systems: a tight-binding approach toward PYXAID

S Pal, DJ Trivedi, AV Akimov, B Aradi… - Journal of chemical …, 2016 - ACS Publications
Excited state dynamics at the nanoscale requires treatment of systems involving hundreds
and thousands of atoms. In the majority of cases, depending on the process under …

[HTML][HTML] Hybrid quantum mechanical/molecular mechanical methods for studying energy transduction in biomolecular machines

T Kubař, M Elstner, Q Cui - Annual review of biophysics, 2023 - annualreviews.org
Hybrid quantum mechanical/molecular mechanical (QM/MM) methods have become
indispensable tools for the study of biomolecules. In this article, we briefly review the basic …

A real-time time-dependent density functional tight-binding implementation for semiclassical excited state electron–nuclear dynamics and pump–probe spectroscopy …

FP Bonafé, B Aradi, B Hourahine… - Journal of Chemical …, 2020 - ACS Publications
The increasing need to simulate the dynamics of photoexcited molecular systems and
nanosystems in the subpicosecond regime demands new efficient tools able to describe the …

[HTML][HTML] Computational and data driven molecular material design assisted by low scaling quantum mechanics calculations and machine learning

W Li, H Ma, S Li, J Ma - Chemical Science, 2021 - pubs.rsc.org
Electronic structure methods based on quantum mechanics (QM) are widely employed in the
computational predictions of the molecular properties and optoelectronic properties of …