Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
Abstract SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel virus of
the family Coronaviridae. The virus causes the infectious disease COVID-19. The biology of …
the family Coronaviridae. The virus causes the infectious disease COVID-19. The biology of …
Genomic diversity, lifestyles and evolutionary origins of DPANN archaea
Archaea—a primary domain of life besides Bacteria—have for a long time been regarded as
peculiar organisms that play marginal roles in biogeochemical cycles. However, this picture …
peculiar organisms that play marginal roles in biogeochemical cycles. However, this picture …
Genome evolution and diversity of wild and cultivated potatoes
Potato (Solanum tuberosum L.) is the world's most important non-cereal food crop, and the
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …
Sensitivity of SARS-CoV-2 B. 1.1. 7 to mRNA vaccine-elicited antibodies
DA Collier, A De Marco, IATM Ferreira, B Meng… - Nature, 2021 - nature.com
Transmission of SARS-CoV-2 is uncontrolled in many parts of the world; control is
compounded in some areas by the higher transmission potential of the B. 1.1. 7 variant …
compounded in some areas by the higher transmission potential of the B. 1.1. 7 variant …
SARS-CoV-2 evolution during treatment of chronic infection
The spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is
critical for virus infection through the engagement of the human ACE2 protein and is a major …
critical for virus infection through the engagement of the human ACE2 protein and is a major …
[HTML][HTML] Transmission of SARS-CoV-2 delta variant (AY. 127) from pet hamsters to humans, leading to onward human-to-human transmission: a case study
Summary Background Transmission of SARS-CoV-2 from humans to other mammals,
including pet animals, has been reported. However, with the exception of farmed mink, there …
including pet animals, has been reported. However, with the exception of farmed mink, there …
[HTML][HTML] Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7
We report severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike ΔH69/V70
in multiple independent lineages, often occurring after acquisition of receptor binding motif …
in multiple independent lineages, often occurring after acquisition of receptor binding motif …
A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
The ongoing pandemic spread of a new human coronavirus, SARS-CoV-2, which is
associated with severe pneumonia/disease (COVID-19), has resulted in the generation of …
associated with severe pneumonia/disease (COVID-19), has resulted in the generation of …
IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era
Abstract IQ-TREE (http://www. iqtree. org, last accessed February 6, 2020) is a user-friendly
and widely used software package for phylogenetic inference using maximum likelihood …
and widely used software package for phylogenetic inference using maximum likelihood …
Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic
As the SARS-CoV-2 virus spreads through human populations, the unprecedented
accumulation of viral genome sequences is ushering in a new era of 'genomic contact …
accumulation of viral genome sequences is ushering in a new era of 'genomic contact …