Colloquium: Criticality and dynamical scaling in living systems

MA Munoz - Reviews of Modern Physics, 2018 - APS
A celebrated and controversial hypothesis suggests that some biological systems—parts,
aspects, or groups of them—may extract important functional benefits from operating at the …

[HTML][HTML] Concepts in Boolean network modeling: What do they all mean?

JD Schwab, SD Kühlwein, N Ikonomi, M Kühl… - Computational and …, 2020 - Elsevier
Boolean network models are one of the simplest models to study complex dynamic behavior
in biological systems. They can be applied to unravel the mechanisms regulating the …

The structure and function of complex networks

MEJ Newman - SIAM review, 2003 - SIAM
Inspired by empirical studies of networked systems such as the Internet, social networks,
and biological networks, researchers have in recent years developed a variety of techniques …

[图书][B] Dynamical processes on complex networks

A Barrat, M Barthelemy, A Vespignani - 2008 - books.google.com
The availability of large data sets has allowed researchers to uncover complex properties
such as large-scale fluctuations and heterogeneities in many networks, leading to the …

Controllability and observability of Boolean control networks

D Cheng, H Qi - Automatica, 2009 - Elsevier
The controllability and observability of Boolean control networks are investigated. After a
brief review on converting a logic dynamics to a discrete-time linear dynamics with a …

A linear representation of dynamics of Boolean networks

D Cheng, H Qi - IEEE Transactions on Automatic Control, 2010 - ieeexplore.ieee.org
A new matrix product, called semi-tensor product of matrices, is reviewed. Using it, a matrix
expression of logic is proposed, where a logical variable is expressed as a vector, a logical …

The yeast cell-cycle network is robustly designed

F Li, T Long, Y Lu, Q Ouyang… - Proceedings of the …, 2004 - National Acad Sciences
The interactions between proteins, DNA, and RNA in living cells constitute molecular
networks that govern various cellular functions. To investigate the global dynamical …

Set stability and set stabilization of Boolean control networks based on invariant subsets

Y Guo, P Wang, W Gui, C Yang - Automatica, 2015 - Elsevier
This study addresses the set stability of Boolean networks (BNs) and set stabilization of
Boolean control networks (BCNs). Set stability determines whether a BN converges to a …

BoolNet—an R package for generation, reconstruction and analysis of Boolean networks

C Müssel, M Hopfensitz, HA Kestler - Bioinformatics, 2010 - academic.oup.com
Motivation: As the study of information processing in living cells moves from individual
pathways to complex regulatory networks, mathematical models and simulation become …

Hybrid-driven finite-time H∞ sampling synchronization control for coupling memory complex networks with stochastic cyber attacks

K Shi, S Zhong, Y Tang, J Cheng - Neurocomputing, 2020 - Elsevier
This paper proposes a new hybrid-driven (HD) sampling control strategy to investigate the
finite-time (FT) H∞ synchronization issue for complex networks with stochastic cyber attacks …