Signaling toward reactive oxygen species-scavenging enzymes in plants

P Dvořák, Y Krasylenko, A Zeiner, J Šamaj… - Frontiers in Plant …, 2021 - frontiersin.org
Reactive oxygen species (ROS) are signaling molecules essential for plant responses to
abiotic and biotic stimuli as well as for multiple developmental processes. They are …

Gene regulatory network inference resources: A practical overview

D Mercatelli, L Scalambra, L Triboli, F Ray… - Biochimica et Biophysica …, 2020 - Elsevier
Transcriptional regulation is a fundamental molecular mechanism involved in almost every
aspect of life, from homeostasis to development, from metabolism to behavior, from reaction …

A specialized metabolic network selectively modulates Arabidopsis root microbiota

AC Huang, T Jiang, YX Liu, YC Bai, J Reed, B Qu… - Science, 2019 - science.org
INTRODUCTION Specialized metabolism is a feature of plant evolution and adaption. Plant-
specialized metabolites have ecological functions, mediating interactions between plants …

Mapping of the plant SnRK1 kinase signalling network reveals a key regulatory role for the class II T6P synthase-like proteins

J Van Leene, D Eeckhout, A Gadeyne, C Matthijs… - Nature Plants, 2022 - nature.com
The central metabolic regulator SnRK1 controls plant growth and survival upon activation by
energy depletion, but detailed molecular insight into its regulation and downstream targets is …

Plant Metabolic Network 15: A resource of genome‐wide metabolism databases for 126 plants and algae

C Hawkins, D Ginzburg, K Zhao… - Journal of integrative …, 2021 - Wiley Online Library
To understand and engineer plant metabolism, we need a comprehensive and accurate
annotation of all metabolic information across plant species. As a step towards this goal, we …

High-throughput single-cell transcriptome profiling of plant cell types

CN Shulse, BJ Cole, D Ciobanu, J Lin, Y Yoshinaga… - Cell reports, 2019 - cell.com
Single-cell transcriptome profiling of heterogeneous tissues can provide high-resolution
windows into developmental dynamics and environmental responses, but its application to …

Genetic contribution of paleopolyploidy to adaptive evolution in angiosperms

S Wu, B Han, Y Jiao - Molecular Plant, 2020 - cell.com
Ancient whole-genome duplications (WGDs or polyploidy) are prevalent in plants, and some
WGDs occurred during the timing of severe global environmental changes. It has been …

ATTED-II v11: a plant gene coexpression database using a sample balancing technique by subagging of principal components

T Obayashi, H Hibara, Y Kagaya, Y Aoki… - Plant and Cell …, 2022 - academic.oup.com
Abstract ATTED-II (https://atted. jp) is a gene coexpression database for nine plant species
based on publicly available RNAseq and microarray data. One of the challenges in …

[PDF][PDF] Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

M Colle, CP Leisner, CM Wai, S Ou, KA Bird… - …, 2019 - academic.oup.com
Abstract Background Highbush blueberry (Vaccinium corymbosum) has long been
consumed for its unique flavor and composition of health-promoting phytonutrients …

Difficulty in inferring microbial community structure based on co-occurrence network approaches

H Hirano, K Takemoto - BMC bioinformatics, 2019 - Springer
Background Co-occurrence networks—ecological associations between sampled
populations of microbial communities inferred from taxonomic composition data obtained …