RNA m6A methylation across the transcriptome

E Sendinc, Y Shi - Molecular cell, 2023 - cell.com
Since the early days of foundational studies of nucleic acids, many chemical moieties have
been discovered to decorate RNA and DNA in diverse organisms. In mammalian cells, one …

The roles and implications of RNA m6A modification in cancer

X Deng, Y Qing, D Horne, H Huang… - Nature Reviews Clinical …, 2023 - nature.com
Abstract N 6-Methyladenosine (m6A), the most prevalent internal modification in eukaryotic
mRNA, has been extensively and increasingly studied over the past decade. Dysregulation …

Absolute quantification of single-base m6A methylation in the mammalian transcriptome using GLORI

C Liu, H Sun, Y Yi, W Shen, K Li, Y Xiao, F Li, Y Li… - Nature …, 2023 - nature.com
Abstract N 6-methyladenosine (m6A) is the most abundant RNA modification in mammalian
cells and the best-studied epitranscriptomic mark. Despite the development of various tools …

Exclusion of m6A from splice-site proximal regions by the exon junction complex dictates m6A topologies and mRNA stability

A Uzonyi, D Dierks, R Nir, OS Kwon, U Toth, I Barbosa… - Molecular cell, 2023 - cell.com
Summary N6-methyladenosine (m6A), a widespread destabilizing mark on mRNA, is non-
uniformly distributed across the transcriptome, yet the basis for its selective deposition is …

Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution

Q Dai, LS Zhang, HL Sun, K Pajdzik, L Yang… - Nature …, 2023 - nature.com
Functional characterization of pseudouridine (Ψ) in mammalian mRNA has been hampered
by the lack of a quantitative method that maps Ψ in the whole transcriptome. We report …

Exon architecture controls mRNA m6A suppression and gene expression

PC He, J Wei, X Dou, BT Harada, Z Zhang, R Ge, C Liu… - Science, 2023 - science.org
N 6-methyladenosine (m6A) is the most abundant messenger RNA (mRNA) modification
and plays crucial roles in diverse physiological processes. Using a massively parallel assay …

Hidden codes in mRNA: Control of gene expression by m6A

S Murakami, SR Jaffrey - Molecular cell, 2022 - cell.com
Information in mRNA has largely been thought to be confined to its nucleotide sequence.
However, the advent of mapping techniques to detect modified nucleotides has revealed …

Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination

YL Xiao, S Liu, R Ge, Y Wu, C He, M Chen… - Nature …, 2023 - nature.com
Abstract N 6-methyladenosine (m6A), the most abundant internal messenger RNA
modification in higher eukaryotes, serves myriad roles in regulating cellular processes …

RBFOX2 recognizes N6-methyladenosine to suppress transcription and block myeloid leukaemia differentiation

X Dou, Y Xiao, C Shen, K Wang, T Wu, C Liu, Y Li… - Nature cell …, 2023 - nature.com
Abstract N 6-methyladenosine (m6A) methylation can be deposited on chromatin-associated
RNAs (caRNAs) by the RNA methyltransferase complex (MTC) to regulate chromatin state …

Identification of nucleoside monophosphates and their epigenetic modifications using an engineered nanopore

Y Wang, S Zhang, W Jia, P Fan, L Wang, X Li… - Nature …, 2022 - nature.com
RNA modifications play critical roles in the regulation of various biological processes and
are associated with many human diseases. Direct identification of RNA modifications by …