Rhythms and clocks in marine organisms

NS Häfker, G Andreatta, A Manzotti… - Annual Review of …, 2023 - annualreviews.org
The regular movements of waves and tides are obvious representations of the oceans'
rhythmicity. But the rhythms of marine life span across ecological niches and timescales …

Commonly used Hardy–Weinberg equilibrium filtering schemes impact population structure inferences using RADseq data

WS Pearman, L Urban… - Molecular Ecology …, 2022 - Wiley Online Library
Reduced representation sequencing (RRS) is a widely used method to assay the diversity of
genetic loci across the genome of an organism. The dominant class of RRS approaches …

Application of phylogenomic tools to unravel anthozoan evolution

ZBR Quek, D Huang - Coral Reefs, 2022 - Springer
Comprising approximately 7500 living species of various corals and sea anemones,
Anthozoa ranks among the most ecologically and economically valuable marine taxa …

Adding leaves to the Lepidoptera tree: capturing hundreds of nuclear genes from old museum specimens

C Mayer, L Dietz, E Call, S Kukowka… - Systematic …, 2021 - Wiley Online Library
Museum collections around the world contain billions of specimens, including rare and
extinct species. If their genetic information could be retrieved at a large scale, this would …

Genome analysis reveals three distinct lineages of the cosmopolitan white shark

I Wagner, I Smolina, MEL Koop, T Bal, AM Lizano… - Current Biology, 2024 - cell.com
The white shark (Carcharodon carcharias)(Linnaeus, 1758), an iconic apex predator
occurring in all oceans, 1, 2 is classified as Vulnerable globally 3—with global abundance …

Taxon‐specific or universal? Using target capture to study the evolutionary history of rapid radiations

G Yardeni, J Viruel, M Paris, J Hess… - Molecular Ecology …, 2022 - Wiley Online Library
Target capture has emerged as an important tool for phylogenetics and population genetics
in nonmodel taxa. Whereas developing taxon‐specific capture probes requires sustained …

Pseudoreplication in genomic‐scale data sets

RS Waples, RK Waples, EJ Ward - Molecular Ecology …, 2022 - Wiley Online Library
In genomic‐scale data sets, loci are closely packed within chromosomes and hence provide
correlated information. Averaging across loci as if they were independent creates …

Genome‐wide phylogeography reveals cryptic speciation in the circumglobal planktonic calcifier Limacina bulimoides

LQ Choo, G Spagliardi, M Malinsky… - Molecular …, 2023 - Wiley Online Library
Little is known about when and how planktonic species arise and persist in the open ocean
without apparent dispersal barriers. Pteropods are planktonic snails with thin shells …

Oceanic dispersal barriers in a holoplanktonic gastropod

LQ Choo, TMP Bal, E Goetze… - Journal of Evolutionary …, 2021 - academic.oup.com
Pteropods, a group of holoplanktonic gastropods, are regarded as bioindicators of the
effects of ocean acidification on open ocean ecosystems, because their thin aragonitic shells …

Unmasking microsatellite deceptiveness and debunking hybridization with SNPs in four marine copepod species of Calanus

M Choquet, AM Lizano, A Le Moan… - Molecular …, 2023 - Wiley Online Library
Interspecific hybridization events are on the rise in natural systems due to climate change
disrupting species barriers. Across taxa, microsatellites have long been the molecular …