Cytoplasmic functions of long noncoding RNAs

JH Noh, KM Kim, WG McClusky… - Wiley …, 2018 - Wiley Online Library
Long noncoding RNAs (lncRNAs) are transcripts longer than 200 nucleotides found
throughout the cell that lack protein‐coding function. Their functions are closely linked to …

Technological developments in lncRNA biology

S Jathar, V Kumar, J Srivastava, V Tripathi - Long Non Coding RNA …, 2017 - Springer
It is estimated that more than 90% of the mammalian genome is transcribed as non-coding
RNAs. Recent evidences have established that these non-coding transcripts are not junk or …

P-body purification reveals the condensation of repressed mRNA regulons

A Hubstenberger, M Courel, M Bénard, S Souquere… - Molecular cell, 2017 - cell.com
Within cells, soluble RNPs can switch states to coassemble and condense into liquid or solid
bodies. Although these phase transitions have been reconstituted in vitro, for endogenous …

Integrative transcriptome analyses of the aging brain implicate altered splicing in Alzheimer's disease susceptibility

T Raj, YI Li, G Wong, J Humphrey, M Wang… - Nature …, 2018 - nature.com
Here we use deep sequencing to identify sources of variation in mRNA splicing in the
dorsolateral prefrontal cortex (DLPFC) of 450 subjects from two aging cohorts. Hundreds of …

Epigenetic silencing of CDR1as drives IGF2BP3-mediated melanoma invasion and metastasis

D Hanniford, A Ulloa-Morales, A Karz… - Cancer cell, 2020 - cell.com
Metastasis is the primary cause of death of cancer patients. Dissecting mechanisms
governing metastatic spread may uncover important tumor biology and/or yield promising …

RMVar: an updated database of functional variants involved in RNA modifications

X Luo, H Li, J Liang, Q Zhao, Y Xie, J Ren… - Nucleic acids …, 2021 - academic.oup.com
Distinguishing the few disease-related variants from a massive number of passenger
variants is a major challenge. Variants affecting RNA modifications that play critical roles in …

Circular RNA circAGO2 drives cancer progression through facilitating HuR-repressed functions of AGO2-miRNA complexes

Y Chen, F Yang, E Fang, W Xiao, H Mei, H Li… - Cell Death & …, 2019 - nature.com
Abstract Argonaute 2 (AGO2), the core component of microRNA (miRNA)-induced silencing
complex, plays a compelling role in tumorigenesis and aggressiveness. However, the …

POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins

W Zhao, S Zhang, Y Zhu, X Xi, P Bao, Z Ma… - Nucleic Acids …, 2022 - academic.oup.com
RNA-binding proteins (RBPs) play key roles in post-transcriptional regulation. Accurate
identification of RBP binding sites in multiple cell lines and tissue types from diverse species …

Accurate quantification of circular RNAs identifies extensive circular isoform switching events

J Zhang, S Chen, J Yang, F Zhao - Nature communications, 2020 - nature.com
Detection and quantification of circular RNAs (circRNAs) face several significant challenges,
including high false discovery rate, uneven rRNA depletion and RNase R treatment …

Screening and validation of lncRNAs and circRNAs as miRNA sponges

G Militello, T Weirick, D John, C Döring… - Briefings in …, 2017 - academic.oup.com
Intensive research in past two decades has uncovered the presence and importance of
noncoding RNAs (ncRNAs), which includes microRNAs (miRs) and long ncRNAs …