The evolutionary dynamics of eukaryotic gene order

LD Hurst, C Pál, MJ Lercher - Nature Reviews Genetics, 2004 - nature.com
In eukaryotes, unlike in bacteria, gene order has typically been assumed to be random.
However, the first statistically rigorous analyses of complete genomes, together with the …

Drosophila melanogaster: a case study of a model genomic sequence and its consequences

M Ashburner, CM Bergman - Genome research, 2005 - genome.cshlp.org
The sequencing and annotation of the Drosophila melanogaster genome, first published in
2000 through collaboration between Celera Genomics and the Drosophila Genome …

Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps

SW Schaeffer, A Bhutkar, BF McAllister, M Matsuda… - Genetics, 2008 - academic.oup.com
The sequencing of the 12 genomes of members of the genus Drosophila was taken as an
opportunity to reevaluate the genetic and physical maps for 11 of the species, in part to aid …

Chromosomal rearrangement inferred from comparisons of 12 Drosophila genomes

A Bhutkar, SW Schaeffer, SM Russo, M Xu, TF Smith… - Genetics, 2008 - academic.oup.com
The availability of 12 complete genomes of various species of genus Drosophila provides a
unique opportunity to analyze genome-scale chromosomal rearrangements among a group …

Principles of genome evolution in the Drosophila melanogaster species group

JM Ranz, D Maurin, YS Chan, M Von Grotthuss… - PLoS …, 2007 - journals.plos.org
That closely related species often differ by chromosomal inversions was discovered by
Sturtevant and Plunkett in 1926. Our knowledge of how these inversions originate is still very …

Muller “Elements” in Drosophila: How the Search for the Genetic Basis for Speciation Led to the Birth of Comparative Genomics

SW Schaeffer - Genetics, 2018 - academic.oup.com
The development of genetic maps multiple species of Drosophila to understand the basis for
species formation became problematic because visible mutations were not easily compared …

Chromosomal organization of the 18S and 5S rRNAs and histone H3 genes in Scarabaeinae coleopterans: insights into the evolutionary dynamics of multigene …

DC Cabral-de-Mello, SG Oliveira, RC de Moura… - BMC genetics, 2011 - Springer
Background Scarabaeinae beetles show a high level of macro-chromosomal variability,
although the karyotypic organization of heterochromatin and multigene families (rDNAs and …

Chromosome mapping of H3 and H4 histone gene clusters in 35 species of acridid grasshoppers

J Cabrero, MD López-León, M Teruel… - Chromosome …, 2009 - Springer
We analyse chromosome location of H3 and H4 histone gene clusters by fluorescence in-
situ hybridization (FISH) in 35 species of Acrididae grasshoppers belonging to seven …

Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila

M von Grotthuss, M Ashburner, JM Ranz - Genome research, 2010 - genome.cshlp.org
During evolution, gene repatterning across eukaryotic genomes is not uniform. Some
genomic regions exhibit a gene organization conserved phylogenetically, while others are …

Genome-scale analysis of positionally relocated genes

A Bhutkar, SM Russo, TF Smith, WM Gelbart - Genome Research, 2007 - genome.cshlp.org
During evolution, genome reorganization includes large-scale events such as inversions,
translocations, and segmental or even whole-genome duplications, as well as fine-scale …